GgaEX1048060 @ galGal3
Exon Skipping
Gene
ENSGALG00000004273 | RGPS1_CHICK
Description
NA
Coordinates
chr8:6635911-6659842:-
Coord C1 exon
chr8:6659716-6659842
Coord A exon
chr8:6636919-6637056
Coord C2 exon
chr8:6635911-6636001
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTCATTCTAATCTTGCTCAGGTA
3' ss Score
7.53
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
Exon sequences
Seq C1 exon
TTACTGAGTCGGAAGGATAAAGCCACTTTTGAGAAGTTGGAGTATGTTATGAGTAAAGAAGATAATTACAAAAGGCTTAGAGATTATATCAGCAGCTTGAAGATGACTCCATGTATTCCCTATTTAG
Seq A exon
GTATTTATCTGTCAGACTTGACGTACATTGATTCTGCATACCCATCGACGGGGAGCATTCTGGAAAGTGAGCAAAGAACAAACTTAATGAACAACATCCTACGAATTATCTCAGATTTACAACAGTCCTGTGAATATG
Seq C2 exon
ATATTCCTCTGTTGCCTCACGTCCAGAAATATCTAAATTCAGTTCAGTACATAGAAGAACTACAAAAGTTTGTAGAAGATGACAATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004273-'18-22,'18-21,19-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(21.6=100)
A:
PF0061714=RasGEF=PD(18.6=76.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCGGAAGGATAAAGCCAC
R:
TGTAGTTCTTCTATGTACTGAACTGA
Band lengths:
187-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]