HsaEX0052108 @ hg19
Exon Skipping
Gene
ENSG00000116191 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:30279]
Coordinates
chr1:178802559-178848127:+
Coord C1 exon
chr1:178802559-178802685
Coord A exon
chr1:178846633-178846770
Coord C2 exon
chr1:178848037-178848127
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTTATCTAATTGTATTTCAGGTA
3' ss Score
10.48
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAATTAGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGTAGCTTAAAGATGACACCTTGCATTCCCTATTTAG
Seq A exon
GTATCTATTTGTCAGATTTAACATACATCGATTCAGCATACCCATCAACTGGCAGCATTCTAGAAAATGAGCAAAGATCAAATTTAATGAATAATATCCTTCGAATAATTTCTGATTTACAGCAGTCTTGTGAATATG
Seq C2 exon
ATATTCCCATGTTGCCTCATGTCCAAAAATATCTCAACTCTGTTCAGTATATAGAAGAACTACAAAAATTTGTGGAAGACGATAATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116191_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(21.8=100)
A:
PF0061714=RasGEF=PD(18.1=74.5)
C2:
PF0061714=RasGEF=PD(11.7=87.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAAGACAAAACTACCTTTGA
R:
ACAGAGTTGAGATATTTTTGGACATG
Band lengths:
162-300
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)