RnoEX0073793 @ rn6
Exon Skipping
Gene
ENSRNOG00000004736 | Ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:RGD Symbol;Acc:1311537]
Coordinates
chr13:74450481-74485288:-
Coord C1 exon
chr13:74485162-74485288
Coord A exon
chr13:74450688-74450825
Coord C2 exon
chr13:74450481-74450571
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGGCTTCCGTTGCAGGTA
3' ss Score
11.69
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAGTTAGAATATGTAATGAGTAAAGAAGACAACTACAAAAGACTCCGAGACTATATAAGTAGCTTAAAGATGACTCCTTGCATCCCCTACTTAG
Seq A exon
GTATCTATTTGTCTGACTTGACCTACATTGACTCAGCGTACCCGTCCACAGGCAGCATTCTAGAAAATGAGCAAAGATCAAATTTGATGAATAACATTCTTCGAATAATTTCTGACTTACAGCAGTCCTGTGAATATG
Seq C2 exon
ATATTCCCATGTTGCCTCATGTCCAAAAATACCTGAACTCTGTTCAGTATATAGAAGAACTACAAAAGTTTGTGGAGGACGATAATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004736-'24-22,'24-20,29-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(21.8=100)
A:
PF0061714=RasGEF=PD(18.1=74.5)
C2:
NO
Main Skipping Isoform:
ENSRNOT00000077169fB12096
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAAGACAAAACTACCTTTGA
R:
TTGTAATTATCGTCCTCCACAAACT
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]