BtaEX6070002 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010718 | RALGPS2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:HGNC Symbol;Acc:HGNC:30279]
Coordinates
chr16:61646353-61689750:+
Coord C1 exon
chr16:61646353-61646479
Coord A exon
chr16:61688333-61688470
Coord C2 exon
chr16:61689660-61689750
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTATCTTAATTTTGTTTCAGGTA
3' ss Score
10.61
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACTAGAATATGTAATGAGTAAAGAAGATAATTACAAAAGACTCAGAGACTATATAAGTAGCTTAAAGATGACACCCTGCATTCCCTATTTAG
Seq A exon
GTATCTATCTATCTGATTTAACATATATTGATTCAGCATATCCATCAACTGGCAGCATTCTAGAAAATGAGCAAAGATCAAACTTGATGAATAACATCCTTAGAATAATTTCTGATTTACAGCAGTCCTGTGAATATG
Seq C2 exon
ATATCCCCATGTTGCCTCACGTCCAAAAATACCTGAACTCTGTTCAGTATATAGAAGAACTGCAAAAGTTTGTGGAAGATGATAATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010718-'15-20,'15-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(21.8=100)
A:
PF0061714=RasGEF=PD(18.1=74.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAAAAGACAAAACTACCTTTGA
R:
ATCATCTTCCACAAACTTTTGCAGT
Band lengths:
202-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]