DreEX6044291 @ danRer10
Exon Skipping
Gene
ENSDARG00000026519 | ralgps2
Description
Ral GEF with PH domain and SH3 binding motif 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1212]
Coordinates
chr20:16075228-16121173:-
Coord C1 exon
chr20:16121047-16121173
Coord A exon
chr20:16075401-16075538
Coord C2 exon
chr20:16075228-16075318
Length
138 bp
Sequences
Splice sites
3' ss Seq
TTGTGTATGTGTTTTTGCAGGAA
3' ss Score
10.32
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
CTTTTAAGTCGGAAGGACAAGGCCACGTTTGAGCGGTTGGAGTATCTGATGTCTAAAGAGGACAACTACAAACGTTTGAGGGATTACATCAGCAGCCAGAGCATGACATCCTGCATCCCGTATCTGG
Seq A exon
GAATCTATTTGTCTGATCTGACGTACATTGATTCGGCGTATCCCTCCACTGGAAGCATCCTTGAAAACGAACAGCGCTCCAACCTCATGAACAACATTCTGAGAATCATCTCAGACCTGCAGAGATCCTGTGAATATG
Seq C2 exon
AAATCCCAGTATTGCCGCACGTTCAGAAGTATCTCAACTCTGTGCGCTACATTGAGGAGCTACAGAAGTTTGTGGAGGACGACAATTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026519-'10-15,'10-14,11-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(21.6=100)
A:
PF0061714=RasGEF=PD(18.6=76.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGAAGGACAAGGCCAC
R:
TATAATTGTCGTCCTCCACAAACT
Band lengths:
210-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]