HsaEX1003637 @ hg38
Exon Skipping
Gene
ENSG00000116194 | ANGPTL1
Description
angiopoietin like 1 [Source:HGNC Symbol;Acc:HGNC:489]
Coordinates
chr1:178852683-178853787:-
Coord C1 exon
chr1:178853594-178853787
Coord A exon
chr1:178853054-178853189
Coord C2 exon
chr1:178852683-178852953
Length
136 bp
Sequences
Splice sites
3' ss Seq
TTGCATTGTCTTATTTGTAGGAT
3' ss Score
8.55
5' ss Seq
ATGGCCAGT
5' ss Score
-1.19
Exon sequences
Seq C1 exon
GACCATTCAAAGACTGTCAGCAAGCAAAAGAAGCTGGGCATTCGGTCAGTGGGATTTATATGATTAAACCTGAAAACAGCAATGGACCAATGCAGTTATGGTGTGAAAACAGTTTGGACCCTGGGGGTTGGACTGTTATTCAGAAAAGAACAGACGGCTCTGTCAACTTCTTCAGAAATTGGGAAAATTATAAG
Seq A exon
GATTTGAAGCTAGCTATGCAAATGAATACTGACATATCAGAAGCAAAAAACAAACAAACAAAAAGAGAATGACAATGTGTGGCTTATAAAACGCAAGTGACCAACTAAAATGGAAGCTCACATTACCACTTAAATG
Seq C2 exon
AAAGGGTTTGGAAACATTGACGGAGAATACTGGCTTGGACTGGAAAATATCTATATGCTTAGCAATCAAGATAATTACAAGTTATTGATTGAATTAGAAGACTGGAGTGATAAAAAAGTCTATGCAGAATACAGCAGCTTTCGTCTGGAACCTGAAAGTGAATTCTATAGACTGCGCCTGGGAACTTACCAGGGAAATGCAGGGGATTCTATGATGTGGCATAATGGTAAACAATTCACCACACTGGACAGAGATAAAGATATGTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116194_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=0.652 C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(29.3=96.9)
A:
PF0014713=Fibrinogen_C=PD(11.0=33.3)
C2:
PF0014713=Fibrinogen_C=FE(41.9=100)
Main Inclusion Isoform:
ENST00000234816fB9290
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACGGCTCTGTCAACTTCT
R:
GAATCCCCTGCATTTCCCTGG
Band lengths:
253-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains