MmuINT0019804 @ mm10
Intron Retention
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130024042-130024381:-
Coord C1 exon
chr5:130024294-130024381
Coord A exon
chr5:130024097-130024293
Coord C2 exon
chr5:130024042-130024096
Length
197 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
AGTGTGGTCTTGTCTTCCAGATT
3' ss Score
8.99
Exon sequences
Seq C1 exon
AATTGGCTCTACTCTTCCAGGAGGCGGGGACAAGACAGAGGGGCAGCGGACGCCATCCGGACCAGAAAAAGCCAGGAGAGACCAGAAG
Seq A exon
GTAACCTGGTCCCTGAGTGTCTTGATCCACTAGGTCCAGGGAACGTGGGACAGAGGGAACAAACAAGAAGGAACGCGAAGTCTGTGGTGCGCTTGCTGAGTGCTGCCCACGTCCTGCAAGCCGAGCAGGTGTCCCAACTCCGTCCCTGCCCCGTAGACCTCCCGAGCCGAGTTGGTCAGTGTGGTCTTGTCTTCCAG
Seq C2 exon
ATTCGTAAGACAGAAGCTCCAGGAGGAGGAGGAACCGCCCAACATGGCATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533:ENSMUST00000161094:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.062
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTACTCTTCCAGGAGGC
R:
CATGTTGGGCGGTTCCTCC
Band lengths:
130-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types