MmuINT0019804 @ mm9
Intron Retention
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130499912-130500201:-
Coord C1 exon
chr5:130500164-130500201
Coord A exon
chr5:130499967-130500163
Coord C2 exon
chr5:130499912-130499966
Length
197 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
AGTGTGGTCTTGTCTTCCAGATT
3' ss Score
8.99
Exon sequences
Seq C1 exon
CGCCATCCGGACCAGAAAAAGCCAGGAGAGACCAGAAG
Seq A exon
GTAACCTGGTCCCTGAGTGTCTTGATCCACTAGGTCCAGGGAACGTGGGACAGAGGGAACAAACAAGAAGGAACGCGAAGTCTGTGGTGCGCTTGCTGAGTGCTGCCCACGTCCTGCAAGCCGAGCAGGTGTCCCAACTCCGTCCCTGCCCCGTAGACCTCCCGAGCCGAGTTGGTCAGTGTGGTCTTGTCTTCCAG
Seq C2 exon
ATTCGTAAGACAGAAGCTCCAGGAGGAGGAGGAACCGCCCAACATGGCATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533-Asl:NM_133768:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.062
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGGACCAGAAAAAGCCA
R:
CCATGTTGGGCGGTTCCTC
Band lengths:
82-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: