MmuINT0019812 @ mm9
Intron Retention
Gene
ENSMUSG00000025533 | Asl
Description
argininosuccinate lyase [Source:MGI Symbol;Acc:MGI:88084]
Coordinates
chr5:130495532-130499966:-
Coord C1 exon
chr5:130499912-130499966
Coord A exon
chr5:130495727-130499911
Coord C2 exon
chr5:130495532-130495726
Length
4185 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
TGTTCTGTCCTCTTGGCCAGAGC
3' ss Score
7.31
Exon sequences
Seq C1 exon
ATTCGTAAGACAGAAGCTCCAGGAGGAGGAGGAACCGCCCAACATGGCATCAGAG
Seq A exon
GTGTGTAGGACTGAGGGGACCTTGCAAAGGAGCGGGGAGGAACCAGTCGGGTTTAACCGCGTATGGGGGCCATCTCCTGCCACACAGACCTGCAGTGATCCTGAAATTCCCGACCACACTTCCAAAGACTGGCTTCACGTAGACTCAGGGATGTCCGCGTCGTTATCTGCCCATCCAGCGCCACCTAGTGGCTTATGTAATGATCTCACTATTGGCCACTATGTCGGGCGGTTTTCCCCGTTTTTTTTTGTTTTTGTTGTTGTTGTTTTGTAGTTTTTTTTTTTTTTCTCGTTTGTTTTTTGAGACAGGGTTCCCATGTGTAATCCTGGAACTCGCTCTGTAGACCAGGCTGGCCTCGACCTCAGAGATCCACCTGCTTCTGCCTCCCAGAGCGCTGGGATTAAAGGTATGAGCCACTGAGCCCTGCGTTTTCCCTTTTTAAAGAATTATTTTAAAATGTATATTTGTATGGATGTTTTGCCTGCATGTATAGACGTCTGTGAACCCCGGGGCTGGCTACTCCCTATGTGGGATCTAAAGGAATGGAGTTACAGATGTTTGAGAGCCACCATGTGGGTGAAGACCAAACCTCCATGCTCTTACTGGCTGAGCCCGGCTCTCCAGCCCCTGTTTTTCTTTCTTTGAGACAGTGGCTAACTTTTAGCCCAGGCTAGACTGGAATTCACCTCTACTCAGACTGGCCTTAAGCGTCTGACAAGTCACCTGCATCCACCTGCTGAGTGTTCAGATTCCGGGTGTGACCTACCACATGAAAGCTTTCCACTTTTTTTTTTTTTTTTTTTTTTTTTTAGCATTGTTTGTTCGTACATAAGTATGTCCATGTGAGCTCTCATACATGTGGTGATCAGAGGACAAAATGTGGGAGTGGATTCTCTTTTCAACAGGCTTGGCAGCAAGGGCCTTTACCCAGTTAGCTACCTCATCTTCCTTACATACCGCTTTTCACCCCACATCCTCTTGTCAGGCCCCACCCAATAGGATAACTCTCTCCTCCTATTCGCTTGTTCCCATGTATAGGAAAACTTGAGTCCCTAAATTGTCCTTGAGGTCCATCATATAGAACCGGCCAGGAGGGAGGGACCTCTCTCCGTGGCCCCAGTGACTCCCTAGGGTGTCGCTGTCCTCTCCTCTGGGCCAGGAATCCCTGGCTTGTCTTCCTATTTAGTGAAAGGTGTGCAAGATATAGGTCTCCCGTGGGCTTGGTTGGTTTAGCTGGTAAATGGAATGATGACAGCTATTGGGCTTCACCTGTAAGGAATGGATCTCAGAGTCATAGCTCTGAACTCTTAGGGAATGGAGGCTGTAGGGAAGCAGATGCCTGCATGTGTGGTCCCTTCTGGTCTTCGTTAGCTGGCAACTCACCTCCTTCCTCGTAGCTCATCATTCCGATTAAAGATTTAACTCACTTGAGTTACGACGGCCTGATCTGCTTAGCTGCTGGGTCATGCGGAGGGTCAGGAACAAGGGCTGGACTTTGGAGCCAAACAGATGTGATTTGTACACCAGGGTCCTTGACCTCTTAGTTCCTTTGTGAAGTAGGGGTGTTGGTGTCCACTTCATAAAAGGATGTAATTGCAGTACCATGTAATTGCAGCGGCCCATGCCTCTAAACCCAGCACTTGGGAGACAGAGGCAGGAGGAGCTCCATAAGTTCAAACCCAGCCTGGTCTATAGACTGAGTTCCAGGACAGCCAGGGCTACACAGAGAACCCCTGTCTTGAAAAACAAACAAAGAAAAAAAAAAAAACAAACAAACCCACACTATTAATCCTCCTACATCTGCCTCCCTAATGCTGGTATTACAAGTGAGTACCACTACACCCAGCTAACAGTAACTTTTCCGATGCTTCTCTTGTGCATTTAAACTGAATCTTACTCATTCCACTCGGCCCTTTTCCCCTTCTCCCAGGCTTCCAGCGTGCAGCAATACCCTCTCCATTTGTATTGGTCCAGCCTGAACCTATCTCCACAAGCCAAAACACATGGCTGGGGTTGTAGCTCAGTGGTGAAACACCAGCTTAGAATCTCTCACTAAGGGACTGGGCTATGACTCTGTGGTAGACCACCTGTGTCTCACAAACAAGGCCCTGGGTTAAATTCCAAATATAGGAATGGGTGGGGTCAAGGGGGAGTGTGTGTCTGGAAGCCTGCTGATGGAATTAGAGCTCAGAGTTCTGCACTCCTGGAACACAGTGGTCTGGGCTGCAGATGGCCTCAGCTTGCCTGAAGCCATTCTGTGGGTTGATACTAATTGTTCTGGCTGCTGTCCTGCTTATTAAGGAGTTGTTATTACCAACAAACCAGGCACAGAGGCCGAAAATCTGGAAAGGAAGGCAGTGGCAGGATGCTTCCTGGGCCTTCCCCTGCAGCCTCCTGACTTGTTTCTCCATACTGACTGTCTGGCCCTGACCCACAGGCCCCAGGGGCCCAGGGGGGAAGGGTGTTGAAGGAGATCCTTCGAAGGTCAGGTGTAGATCCTCTCACAGAGCTGGGGGTGATGCTGGAGGCTGCTTCTGCGGTTCAGAGTCCTTCTGGCGGTTGAGCACAGAGGGGGTGGGCTCCTAGCCAGGGGCCAGAGCAAAGCGCCTGCTCCCTTGAGACACTTCAGGGCTCAGGAGGCAGTGTTGGTAAACTGCTTGCTTTGCAAGGGTAAGGACCTGAATTTGGGTCCCAGTGCTGAAGAAGTTGAAGCTGTTGACCAGCCAGCCTAGCTGAATTCAGGATCAGTGAGAGACAGTGTCTCTAAGAACTTGGTGATACACTGTAATCCCAGCACGGGGGTGGGGTGGGTGGAAGGGGAGACAGAAGGTGAAGATCTCCAGGAATTCCAGACCAGCTTCATTTATATAGTGAGTTCTAAGCTAGCCAAGGATACAGAGTGGGGTCCTGGGTGATGGTTTGAATATTAACTAAGACACCCTGTCTCAAAATTAATAGTAGCAATAAGTAATAAGGTAGAGCGCAATTAAGGAAGACACCACTGACTCCAGCATTCCTGTGTGTGTGTAGGCACACACACACACACACACACACACACACACACACACACAAAGCAGAGAAAACAGAGCACACCCTAACCCTGAACACCCTCAGTCTTCCTTCAGTATGTATTCGCTTTGCAAATGATATCAAACTAAATGCTTATAACGTTGGTTCTTAATCTGTGGGTCACGACCCCTCTGAGGGTGGGGCTTTCCCAGGGGTTGTGTGGGGCCATCAGAAAACACAGATATTTACATTGTGATTCATAGCAGCAAAATTACAGTTATGAAGTAGCAACAAAAATAATTTTATGGTTGGGGGGGAGGGTCACCACAACAGGGTGAACTGTATTTAAGGGTCACGGCTTATAACAAGCCTATCTTGTGGGTACAAACCTTCCTTATTTGTAAAGAGGCAAAACTGAGACTTCAAGGAGTTATATGGTATACCCAAGGGGAAGAAACCTTATGTTCCCTGTGGCTTTTGCACACACAGACTCACACACTCCATGTCCGCCACCAGTGTCCCTACCATGCTTTTCTGCTGGTCCTGGGTTAGCTGTTTCCTGTATATTCTGCACCCCTTCCTATGGCCTGTCCATATCCTGGCCTGTGTCCTTCTCTTTCCAAACACAAGCCTCTCTGACCTATCCTGCTGCTCTCTGGTGGCTGGAGGTGGGGGATCAGCTAATGTCGTCTTAGAAAAACAATGATACAAAAATAGGGGCTGGACAGAGTGGTGGTGATGCACGCCTTTAATCCCAACACTCTGAAGGCAGAGACAGGTGGATCTGTGAGTTCGGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGCGCTATACAGAGAAACCTGTCTCGGAAAACAAGGAAAGCAAAACAAAATAACAACAATTATACAATGTGATCTATCGGCTAGAGAAAAGCAATTTTGGTGTGGTCCCGGGAATGCCACTGTCCCCCTGGTCCATCCCATGTGGTGAGAAAGAACCCTGAATTGTGTTTCTATCATATCTCCTTGCATGCTCACCAAGTTCCCAAGCCTCTGAGTTTCAGCTGCCCTATTTATCCAGTGAGAATAATGTCTAATGCCTAGGACGATGACCCCACGCCCTTTCTGGCTAACTCTCTCAAGGGTCCCTTTTGAGAGTCTGTTTTGTTCTGTCCTCTTGGCCAG
Seq C2 exon
AGCGGGAAGCTATGGGGTGGCCGGTTTGTGGGTGCTGTCGACCCCATCATGGAGAAGTTCAACTCATCTATCTCCTATGACCGGCATCTGTGGAATGTGGATGTGCAGGGGAGCAAGGCCTACAGCAGGGGCCTGGAGAAGGCGGGGCTTCTCACCAAAGCCGAGATGCAGCAGATACTGCAAGGGTTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025533-Asl:NM_133768:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0020615=Lyase_1=PU(35.2=89.2)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: