MmuINT0023893 @ mm9
Intron Retention
Gene
ENSMUSG00000026805 | Barhl1
Description
BarH-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1859288]
Coordinates
chr2:28766862-28771527:-
Coord C1 exon
chr2:28770734-28771527
Coord A exon
chr2:28767085-28770733
Coord C2 exon
chr2:28766862-28767084
Length
3649 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCTTTCTGTGTCTCCGCAGTGA
3' ss Score
11.74
Exon sequences
Seq C1 exon
GGATCCTCGGGCCGTTCTTCTACCCTTTGGCTCTCCCCAACTTGGCGCGCCCTCCTCCCATTCCTCCTGACACTCCCACCACCACCCCCCCTCGGCTCGGCGGCTCGGCGCGGTGCTGCAGAAGACGCGTTGAGCCCTTTTGGATGTAATGCGCAGAGGAGGTTGGCCCAGAGCTCCCGGGCTCCCCCAAGGCTGAACTCCGTCCAAGGTGCCCACAGGCTCCCTGCCCGCCTTCCCCATGCCAGCCCGCAGCTAGGGGCAGGGGCAGCGGCGGCTGGGGTTGGGGGTGGGTGGGGAGCTTTTGGGGAGGACAGGTTGCAGCTTGGCTATGGAAGGCTCTAATGGCTTTGGGATTGACTCCATTCTCTCCCACCGAGCGGGCAGCCCCGCCCTTCCCAAGGGGGACCCCTTGCTTGGGGACTGCCGTTCACCCCTGGAGCTGAGTCCACGCTCAGAGAGCAGTAGCGACTGCTCTTCACCAGCCTCGCCCGGAAGAGACTGTCTGGAGACCAGTACCTCGCGGCCTGGTGCAGCATCTGGCCCAGGTTTGGACTCTCACCTGCAACCGGGGCAGCTTTCAGCCCCAGCCCAGTCGCGAACTGTCACCTCCTCCTTTCTGATCAGGGACATCCTTGCTGACTGCAAACCTCTCGCGGCCTGTGCACCCTACTCTAGCAGTGGGCAGCCTGCAGCCCCTGAGCCTGGGGGCCGCCTTGCGGCCAAGGCCGGGGAGGACTTTCGAGACAAGCTGGACAAAAGTGTCAGCAGCGCTTCATCAGACTCTGAGTACAAAG
Seq A exon
GTAAGAAACTAAGGGGAAAAGCGGGGTGGGTGGGTTCTAAAAAGTGACATGTAAAACTTGAGAGCACACACTTGGAGACAGGAACATAGTCATCTCCAGGATCTCTCAGGCCGGGGCCGAGAGTTGGTTTTCCTCTAGACCTCTCTACCAGCTCCAAAGGTTGAGGTCCTGGAGCAACAAAGAGTTCAGCGTGTGTGGCTCGGAGAAGCTGGGGAGGATACTGTGTGTGGAGGAGAGCAAGCCTCCCCAGGTGTACAAAGCAAACTCTGGCAAGAGCCTCACCTTCTGAGGATCCCTGGGAGGAGAGCTTGCAACAGTGCATAGCTTGGAGGCTGCTGCACTGTTGGAGTGAGAGCCTGGTAGGAAATTCCCATCAGAGCCCTTAGTACAGTACAAATTGTCTAGCTTTTAATCTGAATTTTCCCAAAAGAGGAAAAGGTGGGCCTCCCCACCCATTGAGTGTGGTGTAGTCTAGGCCTGCGAACCATGCAGAAAGAGAGAGGCCAGGTGGCTGGCTGGATTAGGGTCTGAGGCTGAGGCGGAGGGGGAAGAATGCCATACCTACACAGCAGCTCTCTCTGACTTGGGTCTTCAGTGGGTTGAACAGTGGTCACCAGGCTGTGGCCAGGACCCAGAGATTTCTGAGTGGTTATCAAGTTAGTCCTACTTTCTCTTTGGGAATCTCTGTGATGGCTCCCTCTTCATTCTGTCTTAACGAAGGGAGCTGAAGTGGTATTAAATGGACGGAGGAAAGGAAGAGAAGGAAGGAAAGAAGAGGGGAGGGAGGAGAGAAGAGGGGAGGGAGGAGAGAAGAGGGGAGGGAGGAGAGAAGAAAGAGGTTGCTTAGTTTTGTATCTTCTCTTTATGGCTCTGCCTTGACTTTAGCTGCTTATTGGGTCCAGGAGCTCAAAGTTCTTTCCCAGGAGAAGTGAAGTGGCAGAGGCCACAGAGTGTCAAAGGTATCAGGGGATGGAGCTCTCTTGCCAAGCAGCAGAAAATCAAGTCCTGGTAGAGACTGCTCCTGGACTTGTAACTATTACAACTATAGATCCCCCAAGCCTCTTCCTCAGGTGAATGCTATGCCATGAAGACAGCGTCATTGCTGCATGCACCTCCTGGTCTCTATTTGTGCTAAATTTCACAAAATTTAGTTAGAGTCTCTTGAGTCTTCTTTTCAACCAAGAATTCCTCTGAGGGTAGACCCAGGCTCCAAACCGAAGCCCATCAGGTCCTGGTCTCCTTTCTCTCTTCTTCCCTTAGTAGAAATGGCTAGGCGGCCTTCAACCAGGCTGTGGAACCACAATATCTAGAATGCTCCCAGTTCCAAACTCAGCACGCAGAAGAAGGTGTTTTTGGAAACTTGGCCCTTTTGCCTCCCCCTTCCCAGGGGCCTGTTTAGAGAGGCAAAGAGAACTCACCTTGGAGAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTACTTACAATTTGTAACCATCTCTACCTAGTTTCATGATTAGGGCAAAGAGCCATTGGGTCCAGCACTGCTGTACAAACAAGTTACTTCCTTTTATGGTTTTGCCCCTAAGCAGGATTTTGAGGAGAGATTCCATTTCGTTTAAGATAATTGGAATATCAATTTTCTTCTCCTGTCCCTGATGATATCTGAGGAGGGAGATGATGAGAGAGCGGAGAGCCGGCTAAGTATCACTTAAACGGGTTTGGAGCAGAGATGCTGTAGAAAGTTCCAGCCACCCCTAGGCACTGGCTGTTGCTTTTGCCCTTAACAAAAGTCTCTGAAGTGAATGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGCCTAGCACACATCTCAAACAGGGGTGACTTTTGCAAAGTCTGACTTAGGAAGCTAAACTGAGAGACAGACACAGGAGCCAGCCCAGAGGGGCATTTAAGTCCTTCACCACAGCCACAAACCACTGAGTCATTTTGTTCTTGCAGGCAGGGGTGGGGAGCAGGCCAGTCTCATCACAAGTTTCTGGTGTGAAAGATTTCTTAAACAGTAATTACTGAAGTTGAACAGGGCTTTGGAGGTAGCGCGGGTGGCAACAGTACTGGAGCTCTGGGCTCTTAGAGAAACCAAACCAGGCTTCACCCCACCAAAGATCTCTGGTCCCCAGGCTCTAGTACGATGGAGATGGAGTGCGGCTCTGAGGCCGAACTCTAAAAAATTGGACACAAGATAGACAGCCAGAACTGCAGGAGTCCCGAAGGCGCCAGCAGAGCTCGGAAAGGAAGAAAGTCTAAAAAACAAACAACCGACCACTCCAGCGGGATGGCCGATTGTTATCAATAGTCCAAATAATTAGGGGGTAAAGTAAGATTTCTGCAATATCAAGTTTGAGGTCTGAATAAGGATAAGTTTTAGGCTTTCAAGGGAGAAAAGTCATTTTTGTCCCTGCGGGCTCCAAAGCCTCCCAGTGGAGGCGAAAGCTGAAGGCCGAAGGCCGTCTGGGGCAGTTACTCCGGGACTCCGGCGCTCCGGTGCTAGGGCTTCAGGCTCCCTCCCTGTCGCGAAGCACAGCCATTCCGGCTGAAAAGCCTCCCTCCCCAGTGGCTCAATTAACCGGATTATTGTTTCCTACAGAGAAAAATCACCTCACATTCAGCTGAACCCTGTCATGGCAAATGCCCCGCACAATGAATGAAACTCACCGTAAAAGAAGATAAAGAAAGCAGGGGTAGGGTGGGCGGGAGCCCCAGTCTAGAGGGTTATTTTGGGAGAAGTGGACTATTCTGTTCCAATCTTTCCTTGGGAGATGGAGATGGGAATGCCCAACTTGTTCAATTAAACGTGTGTTTTCTGTTAAGTCAACCCCAACGAAAATAGAGGAAAACGAACTAATCTAGCTTTGTCCTGTCTACGGTGGACCTCAGGAGCCGGGAACAGATGGCCATTTGCCCAACCGAGGGCTGTAGCGAGGGTGGGTTGGGAGCCACAGTGGGCACAGCGAAGCCGGGACCTCTGCGATGCACGCAGCCCTTCGTGCCCAGGGACAACATAGGTATTTCTCGCAGCTCCGAGCGCTCTCAGATGCCGACCATGCCGGCTTTCCATCCGCTTAGTTCGAAACTGGTCTAGGAAGCCATCTCTGTAGATTCCTGGCTAACGCAAGGTCGGTGAGGCGTGGGCACAATTATGTTCCCTTCGAGACGATGGGATGCTGAGGAACAAATAGGGTTTTGTTTCTCTACGCGAGCTTTGCGCCCAAACGAGGGAGACTATCCTCCAGAAATCCATTCTCGGCCAGTGACACATTAGGCCGGTCTGCCCCTGGCAGTCTTTATCTCCCCCTCCCCCGGTGTGGGGGAGTGAGGCGGGAGAAAAAGGGTTGAGTTTCTTCAGGGAGCTGCCAGCGGCTTTGGCCCCGTTCACTTCCTACACCGTTTCCTCCTCGCTCATAGTTCACACCCTTCTGCAGGCTGGGAATCCTGGCTCCGATGGCCAGGCCGTAGCATCCCCAAGGGCTTGGGTGCTATGGGACCCCAGAGGTCTCTGCTCTGACGACTGGGACCCGAGGAAGCCCTGACATGCTTTCTGTGTCTCCGCAG
Seq C2 exon
TGAAGGAGGAGGGCGACCGCGAGATCTCCAGCTCTCGGGACAGTCCCCCGGTGCGCCTGAAAAAGCCACGCAAAGCACGCACCGCCTTCACCGACCATCAGCTGGCGCAGCTGGAGCGTAGCTTCGAGCGGCAGAAATACCTGAGCGTGCAAGACCGCATGGAGCTAGCCGCCTCGCTCAACCTCACCGACACGCAGGTCAAGACCTGGTACCAGAACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026805-Barhl1:NM_001164186:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.801 A=NA C2=0.427
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(89.5=68.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: