HsaINT0016645 @ hg38
Intron Retention
Gene
ENSG00000125492 | BARHL1
Description
BarH like homeobox 1 [Source:HGNC Symbol;Acc:HGNC:953]
Coordinates
chr9:132582185-132587551:+
Coord C1 exon
chr9:132582185-132583263
Coord A exon
chr9:132583264-132587328
Coord C2 exon
chr9:132587329-132587551
Length
4065 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
ACATGCCGCTGTGTCCGCAGTGA
3' ss Score
8.31
Exon sequences
Seq C1 exon
ACGGTGCTGACGGGCCCCCGGAGCGGCGAGGGCGCGGAGAGAGGACCTCCCCGGCCAGGTGGAGAGTCATGAGCCGCGGGCAGCCGCCGCCGCTCTCCGCGGTGCTGATGCCGCCAGGTGCGCTCCTTTCCGCCCGCTGCTAGCGCGGCCCGGGCCCGCAGCTATCTGCGGTGCTGACCTGGCCACCCTCAGCCACCACTTGCCTGGAAGAAGCGTGCGGTTTGGATTTTTAAAACGCCATTCTTTATTTAGATTCCAACATCCTCGCGTTTCTTCTGTGCCAAGGGGGCCCTCGGGCCGTCCGTCTCCCCCTTTGCTCTCCCCAACTTGGCGCGCCCTCCCTCCCATTCCTCCCTGACACTCCCACCACCCCCCCTCGGCTCGGCGGCTCGGCGCGATGCTGCAGAAGACGCACTGAGCCCTTTTGGATCTAATGCGCAGAGGAGGTTGGCCCAGAGCTCCCGGGCTCCCCCAAGGCTGAACTCCGTCCAAGGTGCCCGCAGGCTCCCTGCCCGCCTTCCCCATGCCAGCCCGCAGCTAGGGGCAGGGGCAGCGGCGGCTGGGGTTGGGGGTGGGTGGGGAGCTTTTGGGGAGGACAGGTCGCAGCTTGGCTATGGAAGGCTCCAATGGCTTTGGGATCGACTCCATTCTCTCCCACCGCGCGGGCAGCCCCGCCCTTCCCAAGGGGGACCCCTTGCTCGGGGACTGCCGTTCGCCCCTGGAGCTGAGTCCACGCTCAGAGAGCAGCAGCGACTGCTCTTCGCCAGCCTCTCCAGGAAGGGACTGTTTGGAGACGGGGACCCCACGGCCTGGCGGGGCATCCGGCCCAGGTTTGGACTCCCACCTGCAGCCCGGGCAGCTCTCAGCCCCGGCCCAGTCGCGCACCGTCACCTCCTCCTTTCTGATCAGGGACATCCTTGCCGACTGCAAACCACTCGCGGCCTGTGCACCCTACTCTAGCAGCGGGCAGCCGGCAGCCCCTGAGCCTGGGGGCCGCCTTGCGGCCAAGGCCGCGGAGGACTTTAGAGACAAGCTGGACAAAAGTGGCAGCAACGCCTCATCGGACTCTGAGTATAAAG
Seq A exon
GTAAGAAAGCAGGAGGTGAAAACTTGGGGGGATGCTATGTATCTAAAAACTGACATTTAAAAGGAATACACATGGCGGGACATGCACTCGCTCACCTGGGGGCTCCCCCAGGGCTCAGGTTGAGCAGTGGTTCTCCTCAGAACATTTCAGCCAGTCCTGTGGTTATGCCTTTGAGCAACAAAGAGTCTGGTGGAGACAGTGTGGGCAGGGGAGGGATACTGCGTGCCCGAGAGGAGATTTCCCCAAAATGCACAAAGCAAACTTTCTAAACTTCGACTGGGACCCCTGCCCTTCCAGCAGTGCTGGTGGACAGGAGCAGGTCCCAATCAGGCCAGTGGCTCTCTAGGAAGAAACCGTGCAGAAGCAATGGAAGACTGAAAGGGTTCTGCTTTATAGAGTGAAAATACAGCAGAAAAATTTCAGCTGGAGCCCTGAGAACCGTCAGAATTTTCTGCCTTTTAATCTACATTTCCAGACAGGAAGAAAAACAGGGCTTTTCCTCCCAATGGGCCCAGTGTGATCCGGGTTCTGTGAGTCATGAAAAGAGGCACTCACTTCAAAGCAGAAACCTCAGCCAGGAAGCTGCCTGGGAGCAGGTCAGGGGGCTAGTGCAGAGGGCAGTACCCTGCACCCACCCCCCAATGGCTCTCATTGAATTTGATTTTAAGTGCCTTGAGCAACCAACTCCGGGTTTTATGCAAGTTCCAGGGATTCCTGAGTAACCAGCCTTTTCTCCCGCTACACTGGGGTTGTTGCCCCTCCACTTTTCTTTTTACCTCTATGAATCTTCGTTGTTGTTTGTTCCATTTTCATCCCATCGTAACCAAGGAGATGAGATCAGGGTTAAAAGGAAAGGGAGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGGAAAGGGAAGAAGAAAAAAAAAGAATTCCCTAATTTTGTTTCTGACCCCCAGTCACTACCTCGACTTTAGCTGTTTTTCAAAGCCAGAGGCACAAAGTTCTTTCTAAGGGAGAAGTCAAGGGGCAGAAGGTGAAGAGGAGTATGAGGGCTTCATGGGAGACAGCCCCACGTCCCCATCTAGCAGATCACTGGGAGTGGGCAGAGGCTGTTCAGAGCTCTTTCAAGCACATAATTGATTCCCAGAAATCTTTTCAAGAGACAAAATTTCCCTGTAAGGGCAACTTCTTTATTGTCTTGCCCCCTCCCCCAACACCCCCACCCCACCCCCAGCGCCATACTTCCTGGTCCCTATTTGGACCAAGTCTTCCCAAAATTTTAGGAAGGCTCATTTAACACTCTCCTCCCAACCAAGAATTCGTTTGTGGATATGTCCTGACTCCAAACCGAAATTCATCGGTCCGACTGCACATCCCATTTTCTTGATTTCCCCCACACAAATGGCCGAGCCTCCTTCAGCCAGGCTGTGCCGACCATGCCTGGAAAGTAGGCAGGTTTAACGGAGCGGCCAGGAGGAGATCCAGAGGCATGCGGGTGTCCCCAGGCCCGGGCCCAGTGGTCCTTGCTCCTCCCCCGGGGGGCCTGCTTAGAGAGGCAAAGAAAACTTGCGCTGGAGAGAGACTGGCATGGAGAAGGGGGAGGAGGAAGGAGGGGGAAGTCAATGTAAATATATATTCATAACATCATGGTTATTATTTACCATTTGCAACAAGAACGGCCCCGCTTTAGTTAGAGCAAAGAGCACGAATCTTCCACCGCCCATGCTAATGGCTGGAACTGGAGATAGTGAGGCCCTTGCCTCCTTTTATTTATTTGCCCCCAGGAAGGATTTTGAGGACAGGTTTCGTTTAAGATAATTAGAATATCAATTTTCTTCTCCTGTCTCTGAGGATATCTGATCGGGAGGTGACGAGGGCCGGCTGTCTACATATCGCTTAAATAGGTTTGGAGCGAAGGGGGTAGAAGGTCTTGCCCAACCCCCACCCCAGGTGTTGCTGCCTTTGCCCCTAGTGAAAAAAGGAGCAGGGTCAGGCAGCGAGGCCTTGTCTGGAGCGTTTCTCAAACGTGGAGGGGACCTTTTCAGAGCTGAGAAACAGACACCCTGAGCCAGTCCGTGGAGCATTTAAGCTGGTCTACTCTCCAGCCGCCTTCCAAGCTGAGTCATTTCCTCCAAGGAGGGCATGGGGGAAGGTCAGCCTCATCCCAAGTTTCTGCTATCAAAGGCTCTTCAAACAATATTTATTTGATAATATTTAAAGAAGCCAAAACTCGGCTTTGAAGTAAGGTGGTCGGCGACACTAGCGGCTGGATCCAAGGTCCAGGGAGAACCCAAACCAGAGTTTTGTTCCCAGCAGGCAGGGTCGGTGAATGGGCCTGGAACTCGGGGACACTGAGATGTAGCCTCTAGAATCAGAGTCTGGGAAGCCAGTACCCCCTGGGCTGAGCCTATCCAAGAGGAGGCCAAGGCAGAGTGGGCACAGAACCTGCATTCAAAGGCTCCAGTCCACGCTGGAGGGGGAACAGAAGAAAAGCCCCAGTAGCTGACCCATTCTTCCTGACACCACAAACTGAATACCTCCCGACCTCCAACGCAGACCTCGTCCCTGAGAAGCGGGGGATTTTCATTAAGTAGCCCAGGCAATTTGGTCAAAAAGTAAGAGTTCTATGATATCAAGTTTGAGATTTGGATGATCGTTTCCTCAAACTTATTTAAACTATCTGTCTGCACAGACAGAACTCAAGTCCCCCTATTCCAACACATATCCTTCTCCATGCCCAAATATGGGGAGCCCACAGGGCAGGGAGAGCCTGGTGCCAGCCTGGAGGAGGCAGGTGGAAAGCCTTAGCGGGCTGCCGTTTCTCCTCTGCACTCTCCTGGCTCACCAGGCTGGATGCCAGGCCCTCCTTGCAGCGAAGCGCTGCCTTTTCAGTTGAAAAGTCTCGATCCCTAACGGCTCAATTAACCGGATTATTGTTTCCTACAGAGAGAAATCACCTTGCATTCAGCTGAACCCCGTCACTGCAAACGCCACGCACAATGAAACTCCACCATAAAAGAAAACAGAGAAAAAAGGGAGTAGGTTGGGGGAAAGCCCCAGTCTGAGCCGCCAATTTTGGGGAAGTGGTCTAGCTGGTTATATAATCGCTTTAGAGGGAGAAGGAGGGTGAGCATTGAGCTTGTTCGATTAAGTGTTTTCTGTGCAGTCAAAGCCGAACGAAAGTGTCTGGGATAAAGAAACTACCTGTGCCAGGTCTATCCTTCGACCTCAGGAGCTGGGCCCCCGGTGTAATTCTGTCCCGACTGTGGGGTGTAAACACACGATGCCACGCAGGTGTAGCAGGAGCCATCGTTAGCGGGCAATGTAATGACAACGGAACGCAGACCTGGGCAATGCGCGCTGCGCCCAAGGGGCAAGCGAGTGGCAGGGTCGCTTATTCTCCCAGTGCTCGGCGCTCGCAGACCCGGAGCCTTCCGCCCAGCGCCCTGTGTAGGTAGCGAGTGTCGGGAGAAATCATCACTACGAATTCGTTTCCATATAGGGGCAACGCCAGGCGGGGCACAATGATCTGTCCTTGAGGACAAAGAGTGATTCCGGAGAGAGCAGGTTTTTGTCCCTCCACGCAGGTTTCTCTCCCCAGACCCCAGCCTTCGGCTTCCTCCCTTCCTGTCACGGACGCAGCCGGAGAAACTGGGGCCCAGACGCGGAGCTCACTCCGCCAGAAACCCTGGGTCCCTTCCCCTACGCTGGCAGGCTGGGTCCGGTTCCATCGTCGCGGCTCCGTTTATCCCTCCAGGGAGCGCGGGCAGAGCGCCGAGCGCGGCGCAGGGACTGGAGTTCTCGCCAGCTTCGGGTTCTTTCTCCCCGGAGCTGCCCGGGGGGTCTCGGCCTCGGGCGCTCCCGCCGCCGTCCTGTTCCCCTCAGGGTTCATGTCCTGTTCCCGGGGCCCCAGAGGTCCCGTCTGAGAGCGGCCCCCGCGAGCTTGGGTGTCGCGGAACCACCGCTGTCGGAAGCCGAGGTTACACAAACGCCACGGGCAGGAGCGGGAGGGCACCGGCGGCGGCTGCGAGGCCGGGCCCTGACATGCCGCTGTGTCCGCAG
Seq C2 exon
TGAAGGAGGAGGGCGACCGCGAGATCTCCAGCTCCAGGGACAGTCCCCCGGTGCGCCTGAAAAAGCCACGCAAGGCGCGCACGGCCTTCACCGACCATCAGCTGGCGCAGCTGGAGCGCAGCTTCGAGCGGCAGAAGTACCTGAGCGTGCAGGACCGCATGGAGCTCGCCGCCTCGCTCAACCTCACCGACACGCAGGTCAAGACCTGGTACCAGAACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125492:ENST00000263610:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.827 A=NA C2=0.484
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(89.5=68.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development