MmuINT1005362 @ mm10
Intron Retention
Gene
ENSMUSG00000026805 | Barhl1
Description
BarH-like 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1859288]
Coordinates
chr2:28911342-28916412:-
Coord C1 exon
chr2:28915214-28916412
Coord A exon
chr2:28911565-28915213
Coord C2 exon
chr2:28911342-28911564
Length
3649 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TGCTTTCTGTGTCTCCGCAGTGA
3' ss Score
11.74
Exon sequences
Seq C1 exon
AACAACAACAAAAAAGCCAGTCCTAAAGTAAAAGTGACCCAAGTTCGATTTTTTTTTTTTTAAAGGAAGTGGGGGTGGCGGCGAAGGCGCGCGCGGAGGACAGGTGAGAGCTGCGGTGGGAGCCGCAGGGCGCTGTCCACGGTGCTGGCGGGGCCGAGCAGGAGCTCCGGGGCCAGGTGGGGCTGCTCGATCCCGGGGCCGCTGTCGCTGTCCGCGGTGCTGAGGCCTCCAGGTGCGCTCTGTTCTGCCTGCCCGTAACGCGGCCCCGGCCGGTTGCTATCGGCCGTGCTGACCCCTGCCCTGGGCTACCGTTTGCCTGGAGGAAGCGTGCGGTTTGGATTTTGTTTTTTCAAAAGACGATCTTTATTCAGATTCCATCAACCTCGTGTTTCTTCTGTGCCTAAGGGATCCTCGGGCCGTTCTTCTACCCTTTGGCTCTCCCCAACTTGGCGCGCCCTCCTCCCATTCCTCCTGACACTCCCACCACCACCCCCCCTCGGCTCGGCGGCTCGGCGCGGTGCTGCAGAAGACGCGTTGAGCCCTTTTGGATGTAATGCGCAGAGGAGGTTGGCCCAGAGCTCCCGGGCTCCCCCAAGGCTGAACTCCGTCCAAGGTGCCCACAGGCTCCCTGCCCGCCTTCCCCATGCCAGCCCGCAGCTAGGGGCAGGGGCAGCGGCGGCTGGGGTTGGGGGTGGGTGGGGAGCTTTTGGGGAGGACAGGTTGCAGCTTGGCTATGGAAGGCTCTAATGGCTTTGGGATTGACTCCATTCTCTCCCACCGAGCGGGCAGCCCCGCCCTTCCCAAGGGGGACCCCTTGCTTGGGGACTGCCGTTCACCCCTGGAGCTGAGTCCACGCTCAGAGAGCAGTAGCGACTGCTCTTCACCAGCCTCGCCCGGAAGAGACTGTCTGGAGACCAGTACCTCGCGGCCTGGTGCAGCATCTGGCCCAGGTTTGGACTCTCACCTGCAACCGGGGCAGCTTTCAGCCCCAGCCCAGTCGCGAACTGTCACCTCCTCCTTTCTGATCAGGGACATCCTTGCTGACTGCAAACCTCTCGCGGCCTGTGCACCCTACTCTAGCAGTGGGCAGCCTGCAGCCCCTGAGCCTGGGGGCCGCCTTGCGGCCAAGGCCGGGGAGGACTTTCGAGACAAGCTGGACAAAAGTGTCAGCAGCGCTTCATCAGACTCTGAGTACAAAG
Seq A exon
GTAAGAAACTAAGGGGAAAAGCGGGGTGGGTGGGTTCTAAAAAGTGACATGTAAAACTTGAGAGCACACACTTGGAGACAGGAACATAGTCATCTCCAGGATCTCTCAGGCCGGGGCCGAGAGTTGGTTTTCCTCTAGACCTCTCTACCAGCTCCAAAGGTTGAGGTCCTGGAGCAACAAAGAGTTCAGCGTGTGTGGCTCGGAGAAGCTGGGGAGGATACTGTGTGTGGAGGAGAGCAAGCCTCCCCAGGTGTACAAAGCAAACTCTGGCAAGAGCCTCACCTTCTGAGGATCCCTGGGAGGAGAGCTTGCAACAGTGCATAGCTTGGAGGCTGCTGCACTGTTGGAGTGAGAGCCTGGTAGGAAATTCCCATCAGAGCCCTTAGTACAGTACAAATTGTCTAGCTTTTAATCTGAATTTTCCCAAAAGAGGAAAAGGTGGGCCTCCCCACCCATTGAGTGTGGTGTAGTCTAGGCCTGCGAACCATGCAGAAAGAGAGAGGCCAGGTGGCTGGCTGGATTAGGGTCTGAGGCTGAGGCGGAGGGGGAAGAATGCCATACCTACACAGCAGCTCTCTCTGACTTGGGTCTTCAGTGGGTTGAACAGTGGTCACCAGGCTGTGGCCAGGACCCAGAGATTTCTGAGTGGTTATCAAGTTAGTCCTACTTTCTCTTTGGGAATCTCTGTGATGGCTCCCTCTTCATTCTGTCTTAACGAAGGGAGCTGAAGTGGTATTAAATGGACGGAGGAAAGGAAGAGAAGGAAGGAAAGAAGAGGGGAGGGAGGAGAGAAGAGGGGAGGGAGGAGAGAAGAGGGGAGGGAGGAGAGAAGAAAGAGGTTGCTTAGTTTTGTATCTTCTCTTTATGGCTCTGCCTTGACTTTAGCTGCTTATTGGGTCCAGGAGCTCAAAGTTCTTTCCCAGGAGAAGTGAAGTGGCAGAGGCCACAGAGTGTCAAAGGTATCAGGGGATGGAGCTCTCTTGCCAAGCAGCAGAAAATCAAGTCCTGGTAGAGACTGCTCCTGGACTTGTAACTATTACAACTATAGATCCCCCAAGCCTCTTCCTCAGGTGAATGCTATGCCATGAAGACAGCGTCATTGCTGCATGCACCTCCTGGTCTCTATTTGTGCTAAATTTCACAAAATTTAGTTAGAGTCTCTTGAGTCTTCTTTTCAACCAAGAATTCCTCTGAGGGTAGACCCAGGCTCCAAACCGAAGCCCATCAGGTCCTGGTCTCCTTTCTCTCTTCTTCCCTTAGTAGAAATGGCTAGGCGGCCTTCAACCAGGCTGTGGAACCACAATATCTAGAATGCTCCCAGTTCCAAACTCAGCACGCAGAAGAAGGTGTTTTTGGAAACTTGGCCCTTTTGCCTCCCCCTTCCCAGGGGCCTGTTTAGAGAGGCAAAGAGAACTCACCTTGGAGAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTACTTACAATTTGTAACCATCTCTACCTAGTTTCATGATTAGGGCAAAGAGCCATTGGGTCCAGCACTGCTGTACAAACAAGTTACTTCCTTTTATGGTTTTGCCCCTAAGCAGGATTTTGAGGAGAGATTCCATTTCGTTTAAGATAATTGGAATATCAATTTTCTTCTCCTGTCCCTGATGATATCTGAGGAGGGAGATGATGAGAGAGCGGAGAGCCGGCTAAGTATCACTTAAACGGGTTTGGAGCAGAGATGCTGTAGAAAGTTCCAGCCACCCCTAGGCACTGGCTGTTGCTTTTGCCCTTAACAAAAGTCTCTGAAGTGAATGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGCCTAGCACACATCTCAAACAGGGGTGACTTTTGCAAAGTCTGACTTAGGAAGCTAAACTGAGAGACAGACACAGGAGCCAGCCCAGAGGGGCATTTAAGTCCTTCACCACAGCCACAAACCACTGAGTCATTTTGTTCTTGCAGGCAGGGGTGGGGAGCAGGCCAGTCTCATCACAAGTTTCTGGTGTGAAAGATTTCTTAAACAGTAATTACTGAAGTTGAACAGGGCTTTGGAGGTAGCGCGGGTGGCAACAGTACTGGAGCTCTGGGCTCTTAGAGAAACCAAACCAGGCTTCACCCCACCAAAGATCTCTGGTCCCCAGGCTCTAGTACGATGGAGATGGAGTGCGGCTCTGAGGCCGAACTCTAAAAAATTGGACACAAGATAGACAGCCAGAACTGCAGGAGTCCCGAAGGCGCCAGCAGAGCTCGGAAAGGAAGAAAGTCTAAAAAACAAACAACCGACCACTCCAGCGGGATGGCCGATTGTTATCAATAGTCCAAATAATTAGGGGGTAAAGTAAGATTTCTGCAATATCAAGTTTGAGGTCTGAATAAGGATAAGTTTTAGGCTTTCAAGGGAGAAAAGTCATTTTTGTCCCTGCGGGCTCCAAAGCCTCCCAGTGGAGGCGAAAGCTGAAGGCCGAAGGCCGTCTGGGGCAGTTACTCCGGGACTCCGGCGCTCCGGTGCTAGGGCTTCAGGCTCCCTCCCTGTCGCGAAGCACAGCCATTCCGGCTGAAAAGCCTCCCTCCCCAGTGGCTCAATTAACCGGATTATTGTTTCCTACAGAGAAAAATCACCTCACATTCAGCTGAACCCTGTCATGGCAAATGCCCCGCACAATGAATGAAACTCACCGTAAAAGAAGATAAAGAAAGCAGGGGTAGGGTGGGCGGGAGCCCCAGTCTAGAGGGTTATTTTGGGAGAAGTGGACTATTCTGTTCCAATCTTTCCTTGGGAGATGGAGATGGGAATGCCCAACTTGTTCAATTAAACGTGTGTTTTCTGTTAAGTCAACCCCAACGAAAATAGAGGAAAACGAACTAATCTAGCTTTGTCCTGTCTACGGTGGACCTCAGGAGCCGGGAACAGATGGCCATTTGCCCAACCGAGGGCTGTAGCGAGGGTGGGTTGGGAGCCACAGTGGGCACAGCGAAGCCGGGACCTCTGCGATGCACGCAGCCCTTCGTGCCCAGGGACAACATAGGTATTTCTCGCAGCTCCGAGCGCTCTCAGATGCCGACCATGCCGGCTTTCCATCCGCTTAGTTCGAAACTGGTCTAGGAAGCCATCTCTGTAGATTCCTGGCTAACGCAAGGTCGGTGAGGCGTGGGCACAATTATGTTCCCTTCGAGACGATGGGATGCTGAGGAACAAATAGGGTTTTGTTTCTCTACGCGAGCTTTGCGCCCAAACGAGGGAGACTATCCTCCAGAAATCCATTCTCGGCCAGTGACACATTAGGCCGGTCTGCCCCTGGCAGTCTTTATCTCCCCCTCCCCCGGTGTGGGGGAGTGAGGCGGGAGAAAAAGGGTTGAGTTTCTTCAGGGAGCTGCCAGCGGCTTTGGCCCCGTTCACTTCCTACACCGTTTCCTCCTCGCTCATAGTTCACACCCTTCTGCAGGCTGGGAATCCTGGCTCCGATGGCCAGGCCGTAGCATCCCCAAGGGCTTGGGTGCTATGGGACCCCAGAGGTCTCTGCTCTGACGACTGGGACCCGAGGAAGCCCTGACATGCTTTCTGTGTCTCCGCAG
Seq C2 exon
TGAAGGAGGAGGGCGACCGCGAGATCTCCAGCTCTCGGGACAGTCCCCCGGTGCGCCTGAAAAAGCCACGCAAAGCACGCACCGCCTTCACCGACCATCAGCTGGCGCAGCTGGAGCGTAGCTTCGAGCGGCAGAAATACCTGAGCGTGCAAGACCGCATGGAGCTAGCCGCCTCGCTCAACCTCACCGACACGCAGGTCAAGACCTGGTACCAGAACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026805:ENSMUST00000050776:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.801 A=NA C2=0.427
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=PU(89.5=68.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types