MmuINT0027151 @ mm9
Intron Retention
Gene
ENSMUSG00000015083 | C8g
Description
complement component 8, gamma polypeptide [Source:MGI Symbol;Acc:MGI:88237]
Coordinates
chr2:25354918-25355179:-
Coord C1 exon
chr2:25355109-25355179
Coord A exon
chr2:25355026-25355108
Coord C2 exon
chr2:25354918-25355025
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTGTTGTGGTTCTGCCGCAGTCT
3' ss Score
7.24
Exon sequences
Seq C1 exon
AGATGGGATATGTTGGCAGGTACGCCAACTCTTTGAGAACACAGGGGTCCCTGGCCGCTTCTTGTTCCAAG
Seq A exon
GTGAGGCAGGGGCATCAAGGGAGAGGGCTCTGGGCTGGAGGCAGAGGGGAAAGGACTGATGTGCTGTTGTGGTTCTGCCGCAG
Seq C2 exon
TCTCACGGGCCCGTGGACCAGTGCATATGGTGGTTGCTGAGACTGACTATCAGAGCTTTGCCATCCTGTACCTGGAACAGGGAAGGAAGCTGTCTGTGAAACTATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015083-C8g:NM_027062:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.3=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATATGTTGGCAGGTACGC
R:
TTCACAGACAGCTTCCTTCCC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: