BtaINT0029631 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010520 | C8G
Description
Bos taurus complement component 8, gamma polypeptide (C8G), mRNA. [Source:RefSeq mRNA;Acc:NM_001110076]
Coordinates
chr11:106285305-106285894:-
Coord C1 exon
chr11:106285824-106285894
Coord A exon
chr11:106285757-106285823
Coord C2 exon
chr11:106285305-106285756
Length
67 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GACCCGCCGGCTCCCCACAGCCC
3' ss Score
7.1
Exon sequences
Seq C1 exon
GGATGGAATCTGCTGGGCAGTGCGGCAGCTGTACGGAGACACGGGACGCCCAGGGCGCTTCCTGCTCCAAG
Seq A exon
GTGAGGCGGTGGCCGCTGGGGGTGGGTACGGCGCTGGCGGTGGGGCTGACCCGCCGGCTCCCCACAG
Seq C2 exon
CCCGGGGCGCCCGCGGGCCGGTGGACGTGGTCGTCGGGGACACGGACTACCGCGGCTTTGCCGTCTTGTACCTGGAGAGGGCGCGGCAGCTGTCGGTGAAGCTGTACGGTACGTCCTGGGGCCCTGGGGCCCGGGTCTGCTGCGCCCGCAGGGCTGTTGGGTGGGCTGGGTGGGCCCTCTCCTCCCTCCCGCCTGCCCCTGCTCTTCAGCCCAAATGTGGGGACAGAACGGGACGGGGAAGCGGGGCAGCAGGGGTCAGATCGCAGCCCGAGGCACACAGCCCAGCCCCCAGAGCGCCCTGCAGGCCCCTGCCCCGTGGGTGCCCAGGAGCCCGTGTGTCCTGCACGCAGTCCGCTCGCTCCCTGTGAGCGATTCCTTCCTGAGTGTGTTTGAGCAGCGGGTCCAGGGGGCCAACCTGACCGAGGACCACACCCTGTTCTTCCCCAAGTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010520:ENSBTAT00000056838:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(22.2=100)
A:
NA
C2:
PF0006118=Lipocalin=PD(36.1=31.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGCTGTACGGAGACAC
R:
CCAGGACGTACCGTACAGCTT
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development