RnoINT0027500 @ rn6
Intron Retention
Gene
ENSRNOG00000028701 | C8g
Description
complement C8 gamma chain [Source:RGD Symbol;Acc:1309074]
Coordinates
chr3:2725343-2725604:-
Coord C1 exon
chr3:2725534-2725604
Coord A exon
chr3:2725451-2725533
Coord C2 exon
chr3:2725343-2725450
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTACCGTGGTTCTGCCTTAGCTC
3' ss Score
5.76
Exon sequences
Seq C1 exon
AGACGGGATCTGCTGGCAGGTGCGCCAACTCTATGGAATCACAGGGGTCCCTGGCCGCTTCTTGCTCCAAG
Seq A exon
GTGAGGCAAGGGCATCGAGCAAGAGGGTTCGTGGCTGGAGGCAGAGGGGAAGGGAATGATGTGCTACCGTGGTTCTGCCTTAG
Seq C2 exon
CTCCACGGGCCCGTGGGCCAGTACATGTGGTTGTTGCTGAGACCGACTACCAGAGCTTTGCCATCCTGTATCTGGAGCAGGCGAGGAGGCTGTCTGTGAAACTATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028701:ENSRNOT00000061904:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=FE(17.3=100)
A:
NA
C2:
PF0006118=Lipocalin=FE(25.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGGATCTGCTGGCAG
R:
GTTTCACAGACAGCCTCCTCG
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]