MmuINT0028487 @ mm9
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25796898-25800123:-
Coord C1 exon
chr2:25799946-25800123
Coord A exon
chr2:25796990-25799945
Coord C2 exon
chr2:25796898-25796989
Length
2956 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TCTGAATTATTTTTATTTAGTGG
3' ss Score
4.1
Exon sequences
Seq C1 exon
CTAAAACAGTGTTACAGCAGAAGAGCAGCCGGCCTCCTGTCCCTATCTCCAATGCAACCAAACGCAGCTTCCTGGGTAGCCCTGCTGCCATGAGCCCCGCTGACCAGCCACCATCCACCCAGCCTCTTGCTGAAGGCAGTCATCGGTACCACCTCCACTCGGAAGAACCTGAGTGTCT
Seq A exon
GTAAGTCTGTCAGTCATTCCACTTTTGTGGCCAGTTTACCATCTTCTTTCCTTTTACATGATAGCCTGAGAATGGAAACTCTCTTAAGTAAGTAATGCAGAGAGTACCCGAGTAGCTCCTGTTGCTCGCTGTCTGTCCTCCTGCCTGTTCCTGGAGCACTCAGTCTCCTCTTCAGAGGCCAGGAGTCTGTAAGCCTTAGTTGCAATTAACAAGTTTCATTCTTAATTAATACATCAAATTGTAGAAGAGAAAAGAGATTTCTCCCGTATCTCTTCACAGTGAATTACAGTCTCACAGATGATGTAATGAGGAGGAAACTGAAGAACAGTTGGAATTGGCTGTGAAATGTCATCTGATCGCCTTTAGGGATGAAGGCTGCTCAGCTGTAAGCAGTGCTGCTTCATTGCCTTCAGTGAGCAGTGGATGATGACATAGTGAATGGAGCTGCTGGAGAGTGGGTTTTGAGAATGGATTTTTATCATTATCAGCTGGCTAGATCTGGTTGATTGGCTACAACCTTGTCAGTGGGCTGAGGGTGAGATGAAAGAGCTCTCCTGGGAGAGAGTGTGAGCCTCTGTGGGAGGAGGCCTGTGTGTGTTCTCCTGAGAGAATATTTTAAAACAGAAACATAGTTTTAGAATGTGGAGATTGAGTTGAGATTTAAGGTTAAAACGATACTCAGAAGTGATTTTTGAATAGCACATGCAGCTGTATGGCTAGTTAGACACAAGTTGGAAAGGACCTCAACTTTCTCATGTTGACACTAAAGATGCTAGAGGGTCGGTCCAGGAGGAGAGTGTTCAGGGGCCCAAAAAACCTGTCAGGTGGCCCTGGGAATATTTAAGGGCTGAGATCCACTGACAGGATCTGGTCCTTGGAGCAGAGTGGAAAGCTGTGTGTGGCTCAGAGCCCATGGGTACAGACAGACGGTGGCTGAGGAGTGACAGCATCACAAGGGCAGAGCTATATAGCCACATGTGCCTTATGTGGGTACCTGGGCATTCTTGCTGGCAGTCCTTACATCCAGCCCTTGTGCTGGGTCTTTATGGTCAGATCCAGTACATGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATACACGAGCATGCTCTCTCTCCCTCCCCCTCTCCCTCTCTCTAGCTCATGGAACTTGGTTGAGGCAGCATTGGCATCACATGTGCTCTAACTGGCTCAGTGACTTTTTCTACCTAATAGTGACTGTGAAGATTTTCTCATTCATCAAATTCTCCCCTGAATAGCTTGGCACTGTTGCATTTCTGACTCTATTCTGTTTGAATTCTCTGGTCCTTGGTGCCGTGGGTGACTATAGGTTATAAACCACTTTCTTTTTCCTTGCCTTCTGCTGGGCTTCTGGATTTCCTTCTACCCCTCTGTTCAGTTTTGTCTCCCTCTCTTCCTAATGTCCCCTCTTCCCCAGAGGGACTGCCACCTGTCTTTATTCCTTTGGGGTTAACCTTAGTAGTTGCAGTCCAGGGTGTTGAGTGCCCCTGTGATTCCTGCCCAGACTTTATTACTGTCCATTGGTCAACTTCTTCCCCAAAGTAAAATAGCAAAATAGCTGCCCTCCAGTGTGAGTGTGCTCTTCCTGATGGGAAGCTAGTGCCAGTCCCCATGGTTGGGTGTCAGGCTAACGTAGCTGCACTGAACAGTGCTCACCTGGTCTGTGCCTTCGCCACACCCGCTGGTCTCATATAAAGTGGGTGTCCTTATGGCCAGAGCCTTGAGTCCTCTTACTCAAGCTGTAATCAAAGAAGTCAAAAGGTGTGAATAATTGTAGATTTTTTGGTAGCTGTTTCCATATTGTTCTTTAAAATATGTGAGTGTTCTCTCCCAGCTTTGTGGGAGTGCCCTGCTTATCCATTTTCAAGTTACTCTCAACATTTTCAGTCAGTTTGATATAGTGGTACCATCTTTGTGGCCTTTTAAATTTTTTTTATTTTTGTGTTTTTGAGACAGGGTATTACTATATAGCCTCAGATGGCCTAGAACTTGCTATGTAGACCAGGCTGGACTTGAACTCAGAGATCCATCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGTATGCACCACTACCGCCTGGTTTATGAGTGTGACATTTTCATACATATATATCATGCATTGTTCTTACCCAGCTGGTCCCCTTTGTGGTAGTCACTTGGGACTTTGTGCCATATACTGCAACCAGAAGTTGTATGATTTGTGTTCGAAGCTTTGGGATTTGTGAGTGTTGGTGTGTTTGTACACATGTATGCGCCTGTGTGTGGGGGTTGGGGGGACAGAGGTTGATGTTGGATGTCTTCCTTGATCATACTCCATCTTATATTTTGAGATAAGTAAGGTCTCTCATTGAGCCCAGAGCTCACTGATTTGGCTAGTCAGCAGTCTTTGCCAGTACAGTGGCTGCAGATATGTATTGATTGCTCTGTCTGGCTTTTTAATCTGGGTGCTGGCAACTCAGGCCCACCTTATATTTGCATAGCAAACACTTTACCAACTGAGCTCAGTTCCAATTTGGGGATTTTTATCTCAAATTCAAAACTTTATTGGTTTTCTTTTGGTTCAGTTTTATGGAAAGACTTTAACCCAGAGAAACCTGCTGACTGCTCTCAGCTTGATACAAGTTTTTAATAGTCTCTTTCAGTTATATGCCTTTGTTTTATTACTTTTACATTGATTGACAGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATGGTTACTGTACCACAGTGCCTATGTGGAAGTTAGAAGACAACTTTCAGGAATGAGCTCTCTCCTTCTGCCACGTGGGACCTATGCTGTCAGGTTTGGCAGCCAGTGTTCTTCTCTGCTGAGCCGTCTCACTATCCTTTGCCTTTGCTTTTGAACTTGAAGTTTGTTAAACTCATTATTTTTTTCTGAATTATTTTTATTTAG
Seq C2 exon
TGGGAAAGGAGCTTCCACATTTAGTCCGTCCCATCCTTTGTTGCCACTGAGACAGAAACAGCAAAAAGTGTCACAGACAGAGGAAATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933-Camsap1:NM_001115076:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: