GgaINT0125775 @ galGal4
Intron Retention
Gene
ENSGALG00000001692 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr17:8198556-8199536:+
Coord C1 exon
chr17:8198556-8198733
Coord A exon
chr17:8198734-8199435
Coord C2 exon
chr17:8199436-8199536
Length
702 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CTTACTGTTCTGATTTTCTGAAT
3' ss Score
1.02
Exon sequences
Seq C1 exon
TTAAAACAGTGTTGCAGCAGAAGAACAGCCGCCCACCTGTTCCCATCTCCAACGCAACTAAGAGAAGTTTCATGGCTAGTCCTGCAAGTACAAATCCAGCAGATGTGCAGCCCTCAGCTCAGGCAGGCTCTGAAGCTTGCAGTAGATACTACCTGCACCCTGAAGAACCTGACTGCCT
Seq A exon
GTAAGTCTGTTTTCATGTTGTTTAGATTAATCTCCTACTGTATGCTTCCGTTTGGATCGCATAGGAAATTCTGCTTCTAGCTGTTCTGATTTTGCTACAGATTTTCTGCACACAGCTTGAATTCACTCAATCTGTAAAATATTCTGCAGTTCAAAGCAATACTTGGCACTGTTATGTTTGATCTTTGGCAAATTCCCGTGAGCCTCAACACCAAATGTCACCGTTGTCATAGAAGAAATTCTTCTAATTTCTATTTTGAAGATAGCATGAAATGTTAAAACTGTCCAAGTATCTGATCTTTGCTGGCCATGTTCTTTAAATGTTGATATGAAAAACTTAACTATGATTCAATGTACAAGGAAGACAATGACAAGATTTTTCAGCTGAACTAAATGTGAGGGCTGTAAGGAAGTTAATTCAGCCTTTACTTTGTCTCAAGTGTACTGTTACATAAGCTACATTTTTAAGTGACTATTTAAAAACGTAAAAACAATTTGATTTCAGATAGTAGTTTACTCTTCTATTGTTTCATGTGGAAGCCTTAATTTTTCTTTAAGTTCCTTAATATTGATGATATGATTGTGTGTTTTAGGGAGGATGGGGGCAACTATTGCTACTGTAACTTCTTTGCTGTATAACTTTCTTCTGTGGTTATAGAAAAAAGTTCTTTAATTAATGAATTCTTACTGTTCTGATTTTCTG
Seq C2 exon
AATTAGTGGCAAAGCAGGAAGCCCTGCCTTTAGTCCTTCCCATCCACTGCTCCCTTTGAGACAGAAACAACAAAAGTCTTTACAGGGCGAAGACAGCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692:ENSGALT00000002593:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.633 A=NA C2=0.829
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTTGCAGCAGAAGAACA
R:
GGCTGTCTTCGCCCTGTAAAG
Band lengths:
271-973
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]