RnoINT0028774 @ rn6
Intron Retention
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3388352-3390860:-
Coord C1 exon
chr3:3390683-3390860
Coord A exon
chr3:3388444-3390682
Coord C2 exon
chr3:3388352-3388443
Length
2239 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TCTGAATTATTTTTGTTTAGTGG
3' ss Score
4.01
Exon sequences
Seq C1 exon
CTAAAACGGTGTTACAGCAGAAGAGCAGCCGACCTCCTGTCCCGATCTCCAATGCAACCAAGCGCAGCTTCCTAGGTAGTCCTGCTGCCATGAGCCCCGCTGACCTGCCGCCATCCACCCAGCCTCTCACTGAAGGCAGTCATCGGTACCACCTCCACTCAGAAGAACCTGAGTGTCT
Seq A exon
GTAAGTCTGTCAGTCATTCCATTTTGGTGCTCAGGTTACCATCCTCTTTTCCTTACATTATAGCCTGAGAAAAGGAAACTCTCTTAAGTAAGTAATGCAGAGAGTACATAAGTAGCTCCTCCCGCTGTCTGTCCTCCAGCCTGTTCCTGGGGCACTCAGCCTCCTCTGGAGAGGCCAGGAGTCTGTAAGCCTTAGTTGCAATTAAAAAATTGCATTCTTTTTTTTTTTTTTTTTTTTTTAGCCAAAGCACATACTTTATTAGCTCCTGAACTCTAGTTCTCCTTCTCCTGTACAGTTTTGGTTCCACGTAGCCGTCCAGTCCGGCGGGCAGCAATGAGACCCACTTTGCGCCCAGCTGGGGCATCTCTTCGGATAGTGGAAGGCTTGCCAATGTGCTGGTGGTTACCACCGCCAAAGGGATGCTCCACAGGATTCATGGCAACACCCCGCACACGTGGCCAGCAGTTCCTCTTTGCCTTGTACTTATGGTAGGCACGGCCAGCCTTTAAGATAGGCTTGTCAATTCTGCCCCCGCCAGCCACGACACCAACAACAGCTCGGTTAGCAGAGGAAATGACCTTCTTGGACCCTGAAGGCAGCTTCACTCGGGTCTTCTTGGTCTCTGGGTTGTGGGAGATGACTGTAGCATAGTTCCCGGAGGCTCGTGCCAGCTTGCCCCTGTCCCCAGGCTTCTCCTCCAGACAACACACGATAGTACCCTCAGGCATGGTGCCCACGGGCAAAACATTGCCAATATTCAGCTGGGCCTTCTTGCCGCAGTACACAAACTGTCCAGTGTGGATTCCCTCTGCGGCGATGAACAGCTCTGTCCGCTTCTTGAATCGATAGGGATCACGAAAGACTACTTTCGCGAGGGGAGCGCCGCGGCCAGGGTCATGAATGATGTCCTTTACGATGCCTTTAATGTAGCCGTGTCGCTCCGCGAAGTCCACAGCACGCAGACGCGCGGCTCCCTTACGGTGCTTCACGTGCGCACGAAACACAGAACCGGCACCTTTCCTCTGGCCTCGGATCACACGGCCCATGGCGGCGAGTCTGCCGGCAAGCAAGGCCAAAAGAGAAAAATTGCATTCTTAAATAAAATTATTTATGTAATACAATTAATTAATACAGTTTAAACACATCAAATTATGGAACAGAAAAGAGATTTCTCTATTGTCTTTTCACTGTGAGTTAGTTTCACAGATGATCTAATGAGAAGGAGCTGAAGGAGCAGTGAGAATTAGCCTGAAATGTATGTAGTCTGACAGCCGTTAGGAGTGGGGGCTGCTCACCTGCAAGTGTGCGGCCCCGTCGGCTGCAGTGAGCAGTGGAGTTGATGCGGCACAGTGAATGGAGCGCTGGAGTGGGCGTTGAGAATTGGTTTTATCATTATCAGCTGGCTGGATCTGCTTGATTGGCCACAACCATGTCCGTGGGTCTGAGCGGGAGATGAAAGAGCTGTCCTAGGTGGGGATTGAGCCTCTTGGGTGGGAGGGGCCTGCGTGCTTCCACCCGAGAGGGTATTTTAAAATGGAAACATAGTTTTAGACTGTGGAGATTGAGTTGAAATGTACGGTTAAAACAATACTCAGAAGTGACTTTTGAATAACATATGCAGCTGAATGGCTAGTTAGACACATGTTGGAAAGGACCTCAGCTTTCTCATGTTAACACTAAAGATGCTAGAGGGCTGGGCCAGGAAGAGAACGTTCAGGGGCCCAAAAAGCAAGTCAGGTGGTGCTGGGAGTGTTTAAGGTCTGAGACTCACTGACAGGATCTGGTCCTTGGAGCAAAACGGAAAGCTGTATGTGGCTTAGAGCCCATGAGTACAGACGGTGACTGAGCGGTGACAGCGTCACAAGGGCAGAGCTATACAACCACATGCGCCTTATGTGGGTACCGGGCATTCTAGCTGGCAGTCCTTACGTCCCATCCTTGTGCTGGGTCTTTATGGTCAGATCCGTGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTATGGTTACATGTGTACCAGCACATTGCCTATGTGGATGTCAGAAGACAGCTTTGAGGAGTAAGCTCTCTCCTCTGCCATGTGAGACCTAGAAGTAGGATTGGGCTGTCCGGTTTGGCAGCTAGTGTTCTCCTCCGCCAAGCCGTCTTGCTGTCCTTGTCCTTGTTGAACTCACTGTTTTCTCTGAATTATTTTTGTTTAG
Seq C2 exon
TGGGAAAGGAGCCTCCACGTTTAGTCCATCCCATCCTTTGTTGCCACTGAGACAGAAGCAGCAGAAAGTGTCACAGGCTGAGGAGATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883:ENSRNOT00000024163:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=0.938
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]