MmuINT1006011 @ mm10
Intron Retention
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25941378-25944603:-
Coord C1 exon
chr2:25944426-25944603
Coord A exon
chr2:25941470-25944425
Coord C2 exon
chr2:25941378-25941469
Length
2956 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TCTGAATTATTTTTATTTAGTGG
3' ss Score
4.1
Exon sequences
Seq C1 exon
CTAAAACAGTGTTACAGCAGAAGAGCAGCCGGCCTCCTGTCCCTATCTCCAATGCAACCAAACGCAGCTTCCTGGGTAGCCCTGCTGCCATGAGCCCCGCTGACCAGCCACCATCCACCCAGCCTCTTGCTGAAGGCAGTCATCGGTACCACCTCCACTCGGAAGAACCTGAGTGTCT
Seq A exon
GTAAGTCTGTCAGTCATTCCACTTTTGTGGCCAGTTTACCATCTTCTTTCCTTTTACATGATAGCCTGAGAATGGAAACTCTCTTAAGTAAGTAATGCAGAGAGTACCCGAGTAGCTCCTGTTGCTCGCTGTCTGTCCTCCTGCCTGTTCCTGGAGCACTCAGTCTCCTCTTCAGAGGCCAGGAGTCTGTAAGCCTTAGTTGCAATTAACAAGTTTCATTCTTAATTAATACATCAAATTGTAGAAGAGAAAAGAGATTTCTCCCGTATCTCTTCACAGTGAATTACAGTCTCACAGATGATGTAATGAGGAGGAAACTGAAGAACAGTTGGAATTGGCTGTGAAATGTCATCTGATCGCCTTTAGGGATGAAGGCTGCTCAGCTGTAAGCAGTGCTGCTTCATTGCCTTCAGTGAGCAGTGGATGATGACATAGTGAATGGAGCTGCTGGAGAGTGGGTTTTGAGAATGGATTTTTATCATTATCAGCTGGCTAGATCTGGTTGATTGGCTACAACCTTGTCAGTGGGCTGAGGGTGAGATGAAAGAGCTCTCCTGGGAGAGAGTGTGAGCCTCTGTGGGAGGAGGCCTGTGTGTGTTCTCCTGAGAGAATATTTTAAAACAGAAACATAGTTTTAGAATGTGGAGATTGAGTTGAGATTTAAGGTTAAAACGATACTCAGAAGTGATTTTTGAATAGCACATGCAGCTGTATGGCTAGTTAGACACAAGTTGGAAAGGACCTCAACTTTCTCATGTTGACACTAAAGATGCTAGAGGGTCGGTCCAGGAGGAGAGTGTTCAGGGGCCCAAAAAACCTGTCAGGTGGCCCTGGGAATATTTAAGGGCTGAGATCCACTGACAGGATCTGGTCCTTGGAGCAGAGTGGAAAGCTGTGTGTGGCTCAGAGCCCATGGGTACAGACAGACGGTGGCTGAGGAGTGACAGCATCACAAGGGCAGAGCTATATAGCCACATGTGCCTTATGTGGGTACCTGGGCATTCTTGCTGGCAGTCCTTACATCCAGCCCTTGTGCTGGGTCTTTATGGTCAGATCCAGTACATGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATACACGAGCATGCTCTCTCTCCCTCCCCCTCTCCCTCTCTCTAGCTCATGGAACTTGGTTGAGGCAGCATTGGCATCACATGTGCTCTAACTGGCTCAGTGACTTTTTCTACCTAATAGTGACTGTGAAGATTTTCTCATTCATCAAATTCTCCCCTGAATAGCTTGGCACTGTTGCATTTCTGACTCTATTCTGTTTGAATTCTCTGGTCCTTGGTGCCGTGGGTGACTATAGGTTATAAACCACTTTCTTTTTCCTTGCCTTCTGCTGGGCTTCTGGATTTCCTTCTACCCCTCTGTTCAGTTTTGTCTCCCTCTCTTCCTAATGTCCCCTCTTCCCCAGAGGGACTGCCACCTGTCTTTATTCCTTTGGGGTTAACCTTAGTAGTTGCAGTCCAGGGTGTTGAGTGCCCCTGTGATTCCTGCCCAGACTTTATTACTGTCCATTGGTCAACTTCTTCCCCAAAGTAAAATAGCAAAATAGCTGCCCTCCAGTGTGAGTGTGCTCTTCCTGATGGGAAGCTAGTGCCAGTCCCCATGGTTGGGTGTCAGGCTAACGTAGCTGCACTGAACAGTGCTCACCTGGTCTGTGCCTTCGCCACACCCGCTGGTCTCATATAAAGTGGGTGTCCTTATGGCCAGAGCCTTGAGTCCTCTTACTCAAGCTGTAATCAAAGAAGTCAAAAGGTGTGAATAATTGTAGATTTTTTGGTAGCTGTTTCCATATTGTTCTTTAAAATATGTGAGTGTTCTCTCCCAGCTTTGTGGGAGTGCCCTGCTTATCCATTTTCAAGTTACTCTCAACATTTTCAGTCAGTTTGATATAGTGGTACCATCTTTGTGGCCTTTTAAATTTTTTTTATTTTTGTGTTTTTGAGACAGGGTATTACTATATAGCCTCAGATGGCCTAGAACTTGCTATGTAGACCAGGCTGGACTTGAACTCAGAGATCCATCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGTATGCACCACTACCGCCTGGTTTATGAGTGTGACATTTTCATACATATATATCATGCATTGTTCTTACCCAGCTGGTCCCCTTTGTGGTAGTCACTTGGGACTTTGTGCCATATACTGCAACCAGAAGTTGTATGATTTGTGTTCGAAGCTTTGGGATTTGTGAGTGTTGGTGTGTTTGTACACATGTATGCGCCTGTGTGTGGGGGTTGGGGGGACAGAGGTTGATGTTGGATGTCTTCCTTGATCATACTCCATCTTATATTTTGAGATAAGTAAGGTCTCTCATTGAGCCCAGAGCTCACTGATTTGGCTAGTCAGCAGTCTTTGCCAGTACAGTGGCTGCAGATATGTATTGATTGCTCTGTCTGGCTTTTTAATCTGGGTGCTGGCAACTCAGGCCCACCTTATATTTGCATAGCAAACACTTTACCAACTGAGCTCAGTTCCAATTTGGGGATTTTTATCTCAAATTCAAAACTTTATTGGTTTTCTTTTGGTTCAGTTTTATGGAAAGACTTTAACCCAGAGAAACCTGCTGACTGCTCTCAGCTTGATACAAGTTTTTAATAGTCTCTTTCAGTTATATGCCTTTGTTTTATTACTTTTACATTGATTGACAGGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATGGTTACTGTACCACAGTGCCTATGTGGAAGTTAGAAGACAACTTTCAGGAATGAGCTCTCTCCTTCTGCCACGTGGGACCTATGCTGTCAGGTTTGGCAGCCAGTGTTCTTCTCTGCTGAGCCGTCTCACTATCCTTTGCCTTTGCTTTTGAACTTGAAGTTTGTTAAACTCATTATTTTTTTCTGAATTATTTTTATTTAG
Seq C2 exon
TGGGAAAGGAGCTTCCACATTTAGTCCGTCCCATCCTTTGTTGCCACTGAGACAGAAACAGCAAAAAGTGTCACAGACAGAGGAAATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933:ENSMUST00000114167:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=NA C2=0.969
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types