MmuINT0028840 @ mm9
Intron Retention
Gene
ENSMUSG00000038599 | Capn8
Description
calpain 8 [Source:MGI Symbol;Acc:MGI:2181366]
Coordinates
chr1:184534571-184537900:+
Coord C1 exon
chr1:184534571-184534731
Coord A exon
chr1:184534732-184537724
Coord C2 exon
chr1:184537725-184537900
Length
2993 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CATCACTTCACGACTTCCAGCCA
3' ss Score
2.8
Exon sequences
Seq C1 exon
GATGTCCTTTTCGGATTTCTTGAAGCAGTTCTCCCGACTAGAGATATGCAACCTGTCCCCAGACTCTCTGAGCAGTGAGGAGATACACAAATGGAACCTGGTACTCTTCAACGGCCGCTGGACACGGGGTTCTACAGCCGGGGGCTGCCAGAACTACCCAG
Seq A exon
GTGAGGCCGAGGGCCCTCTGGCTTTTCCTGTGGAGGCTGCGTGACTTTTAACATGGATCTGTGGATAATTAATGCTCGTGGGTCTGGGGTCCTGTTTCTCTCTGGCTCGGAGGCCGGCAAGGGTGGATAGTGGCTTTGCAGCTGCCTGTCTGAGGCCTCACCTCAGCTCCTCTGTGTTTAAATCATTTGTGCTTCAGCCCCTCTGCTCTCCCAGCTTGCTGCTTTTTGGTCACCGCTCCTGGACAATTGCTAAGGCCTCCGGCTCGTCTCTTGGACTCCTCCCTTCCCTACCTGGTCCAGCTGGCTAACACCACCGCCACTGAGCTTTGGGGCAGAGTGGCTAATGCTGTCAGACAGCAATCTACTGCTCTTCTGGGCTGTTCTCAGGAGGGTCGTCATTCTGCTTTGCTACCTGAGTTAGAATGGAAGGGGTAAGGCTGTGGGGCCAGGAATGGACATACATGGGCTATATATGGGTCATGTTCCATCCTGTGGGGGTCACCAGGGATCTATCCCTAGTGGGGATGTCCTGGCCCAACTTCTACCTCTGACTTAACTCTGGTTCCTCATCTTGCCAAAGGTGACAGTGACTTCCCTGGTTCCTACTCGATGACTAACATGTACTTGTGTAGGCTCCTTCTAGATCAAGTCCACTGCAGCCAAAGCTGATGAAACAACCGAGAAACAACCCTACAGCTCTCTGGAGAAACAACGAAAAGAAAACCACACACCGGGCTTGCTAGCTCCCCACCTTCACTCTCCTTGGGCTTGCTGTTGCTCTGTTGATTTGTGTTGATTGACTAGGTATCTCTGCAAGGGCGAAGAGCAGCTACTTTCTTCCCAGCCAGGGCACTGCATGCTGTAGAAACGGCAACATTGTAAAACCCCATGTGAATACAGGTCCTTCCTCCACTGCCATCTGTCTCCATCTGGCTGCAAAGAGCAGCTGCTGTCAGGCCTGAAGAGGGAGCTGATGGCCTGCCCCCATCAGTCAGCTTAACAATTGTGAGACCTGGGGGCCATTCCTTTCCTGGATCGTCAGTTTCTCAGTCCTCACCATGGTTCATAATTCTTACCTTCCAACTAGCTGTGGCCCAGTGAGCATTGTAACGCAGAGTGCACGGGGAAGCGCTTTGTAAACTGCGCGGCGTTATACAAATGGGATGTATTATTTTTATGGCCCATTCTCTTCCTATAGTACTGTTAAGGAGTAAACAAAAAATGTAGGGATTGCGGTAATGCTACATTTGGGAGAAATTAAAATATGCTCACCATTAACAAGCTCTTAGAGAAGACATAGGAAATTCGCCTGCCTCATTCTGGAAACTCAGAACCATAGGGGGTTCCCAAGGTATACGCGCCTACCAAATCCTAATCCCATCTGTGCTGGCAGCCAGCTGTCAGGGAGAAATGGATTGTTCTTGCCTCGTGGTAATGCAGTAAGTACAGACGATTACTGAATTTTCTGTCTCCCCTGGAATCCACAGACACCTGATCGTAAAATCTATATGCACCTGAGCCTTGAGTGAAAAAAAAAATCCTTAGAAATGGAGGTTCCGGGAAGGAGAGACTGAATAAATACTCTCGCTGTTAGGGGAAAAAATAAAGGACGTGTGTTGGCCGTATGCGACGGCTATGCTGGTTTTTAGTGTTGTACCACTGTATAGAGATGGTGAAAACACTTGCAGTCCCTCCTCACTCTCAAACAAATATTCCTCCCCAACTCGTTGTTGCAGTTGAACACTTAACACAGTGAAATCTGCCAGCTCTGTCTCCTTCAATTGTACTCTAAATTCAACTCCACCCATAGAACTGTTGTGTGTCTACGTCTGATCTCTTAGATTTCTCTGCGCCTCGCTTGAGTAGATACTAAGTTGAGAGATCTTTTCAAAAACTGTCTTTGAATAAAAGGCATCATGTGTGTGCATGGGGTGTTGGTTTGTGTCCCCGGGTGTGTGCACACTTGCAGAAGATGTCAGGTGTCTTCCCAGATCGATCTCCACCCAGCTCTATCACCCTTTGTCCCTCATGCCTTTGACACAGGGTCGCACACTGAACCTGGAGCTATGCCAGCAGGGCCAGCAATCCCTGTTTCTATCCCCCAACAGCACAGTCACAGTCACAGCCATGACGTTTGTCATGGTGCTAGGATCTGAACTCAGGTCCTCTTGTTCACCCAGCAAGCCCCCTTACCCACTGAGCCATGTCCCCACCTCTAGAAGGCATCTTTTTAAGTATCCATAGGTGGTGAGTCAGGAAAGTTTAGTGCACCGTGGTTTCTCTTACATTATTAAATGGCGTGTCTGGAAGGGCATGTGTCTCATCAGTAGGCTGTAAGCCTGGGAGCATCCTGGGAGGCTTCTTGGGCTAAGGGGCAGAGGGTGGTGGGTCTCAGGGCCTTGTGGAATTAAAATCCAAAGCAGGAGCTTCTCCAGGGCTTGGTGGAGCCCACGGCAGTCAGAAGGCTTTCAAACTATCAGGCAGACACCTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCCTGAACTCAGAAATTCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACTGCCCGGCACTTCTATGATTCATCTGGTACTCTGTCCTTATCCACCAGCTCCTTCCAGGTGGAGTCTTTAGCTAAGAGCAGGAAGAAATGAAGGACTTCCGGGAAGGCAAGATATTGCTTCCTGGTACAGTCCAGAGCAGCCCGAGATGCTAGCTACTCAGACAGTTCTGGGCTACTGGTTGATTCAGCTGATAAGATACTCAGTTCTAAGTGTCTACCTGTGGGATGGGTCAGGGAGGTTCGGCTATGTCAGGCAGTCTGGCCAGTGTTATTCTTTCTGGGGATGATGGAAGTTCTTGCCTCTTTTTTTTTTTTTCTCACCCTGTTGGACCACCATCACTTCACGACTTCCAG
Seq C2 exon
CCACTTACTGGACCAACCCCCAGTTTAAAATCCATTTGGACGAGGTGGATGAGGACCAGGAGGAGGGCACCAGTGAACCCTGCTGTACAGTGCTGCTGGGTCTGATGCAGAAGAATCGCAGACGTCAGAGGAGGATCGGCCAGGGCATGCTCAGCATAGGCTATGCTGTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038599-Capn8:NM_130890:9
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PD(6.3=34.5),PF0106717=Calpain_III=PU(15.2=43.6)
A:
NA
C2:
PF0106717=Calpain_III=FE(36.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: