MmuINT0030503 @ mm9
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21797982-21799382:-
Coord C1 exon
chr9:21799257-21799382
Coord A exon
chr9:21798105-21799256
Coord C2 exon
chr9:21797982-21798104
Length
1152 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
GTGCCCTGTCTGTCCTCTAGAAC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GAGGAGAGTCTCAACTTGGAGAGCCGGCTAGATTCCATGGAGGCTGAGGTGATGAACACCAAACATGAGGTTCAAGAGCTGAAAGTAGTGAATCAAGAGGCTATAAATGCCCGGGACATTGCCAAG
Seq A exon
GTACTAGCCTGCCTCCCCGGACGGTGGGGGGGGATCCTTCCCAGACGCCATGGTTTTATATGACTTTTCCTGGGAAGGTGGTATTTCCTAGTCCCACATAAAACACTGCCCACCGACAGGTGGGTAGATGCATGCTTTTAATCTCAGTGTTTGGAGGCCAAGGCAGGAGCTCAGTGAGTTCCAGGCCGGGGCAGCCAGGGACCACTCCACAAAGACCAACTTGGCTAGCACTAGGTTTGTTGGCTTCCTCGCACAACATGACTGAGGCACTACTGGCATGAAAGCCACATGCATCTCTAGGGTTCCGTTCATCAGTGTCACCTTAGTCTTACTTAGGGTTTCCATTGCTGTGAACCGACACCATGACCAAGGCAACTCTTCTGAAGGACACTTAATCAGGGCTGGCCTAAAGGTGCAGAGGTTCAGGCCATTATCATCAAGGCAGGAGCATGGCAGCATCCAGGCTGGCACGGTGCTGGAAGAAAAGCTGAGATTTCTACATCTTGTCCTGATGGCAACCAGGAGAAGACTGGCATCCTCAGGCAGCTAGAAGGAGGGTGTCAAAGCCCACCCCACAGTGACACACTTGATCCAACAAGGCCACACCTATTCCAACAAAACCACACCTCATAACAGTGCCAAGCAGTCAAACACATGAGCCTGTGGGGGCCAAACCTATTCACACCACCACGCCCATTCATTGTAACATGGGGAGGAGCCTTATGAATCTTGTTTCTTCTTTCTTTTGGCGGGGGGTGGTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGAAGTTTCTTCAGAGAAGAAACTCAGCGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTACCACCACTGCCCAGTACGTGAATCTTGTTTCTTGAGCATTGTAAGTTTCATGAACTTCCTGAGCCTTAAGCCTCCTCCTTCCTCTACTGGGGAGTGTTTCAATTAAGAGAAAATAGTTCTGGAATACCAAGGGCTCAAGGGACCCTAGTCAGAATCTAATTCTCTTTAAGTCTTTCCTGGCAATCACATTGCTGTTGTGCCCGCTGCTCCTCTTATAGCCTGGATAGATATCAGGTGCCCTGTCTGTCCTCTAG
Seq C2 exon
AACCAGCTGCAGTATCTGGAGGAGTCTGCGATCAGAGATCGCAAGAAGCGCGAGCATTACATAACTGACTGCAAGAAGCGGGCAGAAGAGAAGAAACTTCAGACAGAGCGTATGGAGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-Ccdc151:NM_029939:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.549
Domain overlap (PFAM):
C1:
PF079166=TraG_N=PD(7.8=31.0),PF0093016=DPPIV_N=PU(14.4=38.1)
A:
NA
C2:
PF0093016=DPPIV_N=FE(36.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTCTCAACTTGGAGAGCC
R:
CTTGCGCTCCATACGCTCTG
Band lengths:
246-1398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: