RnoINT0030556 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23004688-23006334:-
Coord C1 exon
chr8:23006209-23006334
Coord A exon
chr8:23004811-23006208
Coord C2 exon
chr8:23004688-23004810
Length
1398 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTT
5' ss Score
8.4
3' ss Seq
AGTGCCCGCCTGTCCCCTAGAAC
3' ss Score
7.96
Exon sequences
Seq C1 exon
GAGGAGAGTCTCAACTTGGAGAACCGGCTGGATTCCATGGAAGCTGAGGTGATGAACACCAAACATGAAGTGCAGGAGCTGAAAGTGGTGAACCAAGAGGCTATAAATGCCCGGGACATTGCCAAG
Seq A exon
GTACTTGCCTTCTTGTCCCAGATGGGGCAGGGGCGGGGGTACTTGCCTTCTTGTCCCAGATGGGGCAGGGGTGGGGGCCCTTCTCATATACCAGAGTTTTACAGGACTTTCCCTGGATAGATGGTGCTCTCTCTTCCCACATAAAACACTAACCACGAGGCTGGAGAGATGGCTCAGTGGTTAAGGGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCGAGCAACCACATGGTGGCTCGCAGCCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTATCTGAAGACAGTGACAGAGTATTCATATGAAATAAATAAATCTAAACATTAAAAAAAAAAAACACTAACCACTGACAGGTGGGTTGATGCATGTTTTTTGGTTCTTTTTTTTTTTTGGTTCTTTTTTTTTTCGGAGCTGGGGACCGAACTCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTTGATGCATGCTTTTAATCTCCATGTTTGGAGGCGGAGGCAGGATCTCTGTGAATTCCAGGCCAGCCTAGTCTACATAGAGAGTTCTAGGTCACCCTGGGCTACAAAGTTACAAAAATAAAATAAAACCAAACCCCAACCACTCCACCAAAGACCAACTTGGAGAACAATGAGTTTATGAGGCTTTCTTCCAGAACATGGGTGAAGGGGGTCACTGACATGAAAGTGGGATCTCTAGAGTTCCATTCATCAGAGTCCCCTCATCAGAGTCAGATAGGGTTCCCATTGCTGTGAACAGACACTATGACCAAGGCAACTCTTATAAGGACAACGTTTAATCAGGGTTGGCTTACAGGTCAGAGGGTCAGTTCAGTATTATCAAGCCAGGAGCATGGCGGCATCCAGGCAGGCACACCTCTATAGAGTTCTATATCTTGTTCTGATGGCAACCAGGAAAAGACAGACTTCCTCATTCAGCTAGGAGGAGGATCTCAAAGCCCACCCCCACAGTGACACACTTGCTCCAACAAGGCCACACCTATTCCAACAAAGCCACACTTTGTAATAATGTCACTCTGACCAAGCATTCAAACACATGAGTCTGTGGGAGCCAACCCTATTCAAACCAACACACCCATTCACTGTAACATGGGGGTGGGGAGGAGACTTGTGAATCTTGTTTCTTGAGCATTGTAAGCTTCATGGACTTCCTGAGCCTTGGGCCTCCCTCTCTCTAGTGGGGAGTGTTTCAGTTCAGAGGAAATAGTTCAGGAATACCAAGAGAGCAGAGACTCTAGTCAGAATTCACTTGTCTTTAGCCTCTCCTGGCAATCACATGCTATTGGGTCGCGTGGTGCCCACTGCTCCACTATAGCTGGACAGATACCAAGTGCCCGCCTGTCCCCTAG
Seq C2 exon
AACCAGCTGCAGTATCTGGAGGAGACTGCGATCAGAGACCGCAAGAAGCGTGACCATTACATAACTGACTGCAAGAAGCGGGCGGAAGAGAAGAAACTCCAGACGGAGCGTATGGAGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=NA C2=0.537
Domain overlap (PFAM):
C1:
PF079166=TraG_N=PD(7.7=31.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGTCTCAACTTGGAGAACCG
R:
CTTGCGCTCCATACGCTCC
Band lengths:
246-1644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]