MmuINT0032015 @ mm10
Intron Retention
Gene
ENSMUSG00000025461 | Cd163l1
Description
CD163 molecule-like 1 [Source:MGI Symbol;Acc:MGI:2443796]
Coordinates
chr7:140229035-140229882:+
Coord C1 exon
chr7:140229035-140229058
Coord A exon
chr7:140229059-140229744
Coord C2 exon
chr7:140229745-140229882
Length
686 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
GCCGTCTCTATGCCCTACAGCTC
3' ss Score
8.18
Exon sequences
Seq C1 exon
GTGTCTCCACGACCACTGCATTGT
Seq A exon
GTAAGTGTCTCTTTCTCAATCCAGCCTCCCTGCCTCCATCAGCCAGAGGGCTGGCAGTGGAGCTCAATCCTGACTGGCCCGCTTCGGAAACCCGTGCTATGATGGTCATAGCACCAGTATCAGATCTAGGCTGTCTCATCCTTCTGTGATGGAAACTTCTTCTTCCTTCCCCTGTGCCTGCCAAGTGGGAAACGGAGGGGTGCCAGAGGTCACCAGTCATCACTTTTTAGAGCCTTTAATTTGGGGATTATGTTGTTAGCTTTGGTATACTGTGCTGTCTTGGATTGTTTTTTTTTCTCCCCCCAGTGCAGAGTAGAGGGTAGGGTAGTGAGGACCCCAAGCCCTGCCCTGTGCTCACATCTGTGTCTTTTATCCTTCCCCCATTCCCTGCCTGGCTCCTCACTGTTGAACATTCCTATTATATTTCCCAATGGCATCTACATAGCCACCTACATGGGCTTTCTTACTTCCTCTAATCTGGGACGGGGCATCTGGGGGTCTCCTTTTTGGGTAGTTTGCCCTATAAGCCTTTAGACTATTTCCCATGAGCAGCAGCCTGAGCTCAGGTATTCTGGAGATCCAGCTGTCCTGGGTGCCCCAACCCCTTTCTGCAAGGCTGAGATCATTTAAGCCTTGGGTCTGATTATTCCATACAGTGAAGGCACAGCCGTCTCTATGCCCTACAG
Seq C2 exon
CTCCTTCCCTGACCCCTCCATCGGTTGCCGAGGTCTGGAAACTGTCGGAGATTGCCTGCTTGGTGCTTGGCTGCCTTCTGGGCATTGTCTTCCTGGTTATGATTGCTCAGTGGTGCCACATCAGAGATGCTAGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025461:ENSMUST00000209637:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types