MmuEX0010138 @ mm10
Exon Skipping
Gene
ENSMUSG00000025461 | Cd163l1
Description
CD163 molecule-like 1 [Source:MGI Symbol;Acc:MGI:2443796]
Coordinates
chr7:140228982-140230471:+
Coord C1 exon
chr7:140228982-140229058
Coord A exon
chr7:140229745-140229882
Coord C2 exon
chr7:140230300-140230471
Length
138 bp
Sequences
Splice sites
3' ss Seq
GCCGTCTCTATGCCCTACAGCTC
3' ss Score
8.18
5' ss Seq
TGGGTATGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GTGTGGGCACATCTGTTCTGCTGAGGCCTTCCCGTTTCATATTTCTCTTGCAGGTGTCTCCACGACCACTGCATTGT
Seq A exon
CTCCTTCCCTGACCCCTCCATCGGTTGCCGAGGTCTGGAAACTGTCGGAGATTGCCTGCTTGGTGCTTGGCTGCCTTCTGGGCATTGTCTTCCTGGTTATGATTGCTCAGTGGTGCCACATCAGAGATGCTAGCATGG
Seq C2 exon
GTGCTGGCATGTTGGGGCATCTACAGTCAGAAGGTATCTATGAGGACATTGAAGTTGACCCTGTGCCAAAGAAGGAGGAGAACACAGTATCCAGGCTACTGATGCTGGAAGAGGGTTATGATGATGCTGAAGAGCCTGAGGATCAGCCCACAGAGAATGACGAGTAGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025461-'14-15,'14-14,15-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGGCACATCTGTTCTGC
R:
ACTCGTCATTCTCTGTGGGCT
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types