MmuINT0032378 @ mm9
Intron Retention
Gene
ENSMUSG00000016493 | Cd46
Description
CD46 antigen, complement regulatory protein [Source:MGI Symbol;Acc:MGI:1203290]
Coordinates
chr1:196912286-196918442:-
Coord C1 exon
chr1:196918293-196918442
Coord A exon
chr1:196912475-196918292
Coord C2 exon
chr1:196912286-196912474
Length
5818 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGA
5' ss Score
7.84
3' ss Seq
TCTTGCTGAATTGTCTCTAGATG
3' ss Score
7.87
Exon sequences
Seq C1 exon
AGTTTCCCTTTCAGTCTGGTAACATGACGGCGGCGCCTCTTATGCCAGACTCAACGCACCCCTGTCGCAGAAGGAAGAGCTACACTTTCTTCTGGTGCTCCTTGGGCGTCTATGCTGAGGCCCTTCTGTTTCTGCTGTCTCATTTATCTG
Seq A exon
GTACGATCCAGGAGAGAGGCTGTGTCGCAGGGAAGCTGGGAGGAGTTCAGGAGTTCCTGGTAGAGCCCTCTTAGGGTTGTGTAAATGTGTGAGTTTTGCTGTGACTATGGAGATCATTCAGTCCTCACCCCGAAAGTGCAGATTTCCTTAGTAGGCAGTAGTTAAGGGGTGGGCAGCCTGAGTGGAGGGAGGGGTAGATGTTCACTTAGAGCCCCACTGTGTCAGTAGCAGATTGCACGGCTTATGCTGTGGGCAAGCAACTCTGGGTTTAGAAGGGAGGGAAAGTCACACTTGGCCTCCCCCTTTAAGTCAAATTTCCTTGTTGCCCGAGGCAGTATGTATGGGCTTGGTTTATAAGTGGCTATTTTGCTGGGCATGGTGGCGCATGCCTTTAATTTAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGGTCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAAAGAAACCCTGTCTCGAAAAAAAAAAAAAAGTGGCTATTTTGTTTGGCTTTTCAATTTCATTAGATTCCCCCCCCCCCCACACACACACATATACAGTGTGTTTAATCATATTCCTTACACTCCTACTCCCTGCTTGGAATTAGTGTCCATTCCTAGCCAAAGCAGACAGTGTCTGATTCTATTACCAAATGGCTCTGAGATCTTATCTTCCTTTACAGATAAAGTCATAGTAGAAAAAGGACAATCTAGACATCACTCCTGAGACAAGAAGTATAAGTAGCACTCTGGTTTTCACCTTAGCTCATGAACTAAAACTCAAGCTTTATCCCACCACATTTGGATGGTGTTTCATTACATGGAATAAATACTATACATGGTTAGTTACTTTATAAAATTTACACAAAGAACAATACTTCTGTTTTCTTCTGTTTTGCAACACTCTGTGTTTGTGACATATATACATAATCTTGTTCATATAGTCTGTATTTCTATATTTTTTCTTATCAGTATCCATCCAGCAACTTTTGCCTTCTATGTTCCAGACTCTGTGCTGGTCCGGAGGATGGAGATGTTGGGAGACAGTGACAAGCCTGTCTTGGTTTTGTGAGCCTCTTCCACTGATTGTTCACACACATATATGTATAGGAATGTAAGCAGGCACTTTATTGTGCTGATAGATCCCTAGTGGCAATACATAGTATATGATCTATAAATATTTGCTAATAATAACCAAAGCTTAACATGAAGGAATAGAACCATGCTCTGGAGTAAAGGAACATGCTTCTCTGACTGGATTTTAAAATGACTGAGGGACAGGACAAACAACAATCCCAACTCTGACACTTTAAACCACTGGTTTTTTTTTGTTTGTTTGTTTTGTTTTTTTTTTTTTACTGTTTTTCTTATATATAGAACCTTCTCCTGATATTACATATTTGACTATTTTCTCTTCAAACTTAGTTGGAATGTCACCCCCCCCCCCCAGGGAGACCTCTTCTGACTACCCTTAGTAGACATAACCCAACTTAACCCATCTCTCAACTTGCATCACACCTATAAAACTGGCTTTTCTGTTCTCTACCTCTCTGAATAGGAAGGCAAGAGATCTTTTCTTTTTTTCACACTAGTGACTCCAAATGGTTTTTTTTTTGTTTGTTTGTTTGTTTTGTCTTAGTGTTGTTGCTCTTACAAAACTCAAGTACCAGAATGTTAAATATATTTGGCCAATGCATGAAGCACAGAAAAGATTCTTCCTGCTTGCAGGAGGAACATTCTTTCAAGAACTTTGCTTTTTCATTAATCGCTATAAAATTCACTTCACAAGGAATAGAAGAGGCAGGTACTAGCATAATAGGAAACCAATGGATTTTGAAAAAGAATAATGTTTGGGATGAGCTAAAAGAAGATTCTGCAGTAGCTGGGCGTGGTAGCACACGCCTTTAATCCCAGTACTCAGGAGGCAGAGGCAGGTGAATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAATGAGTTCCAGGACTGCCAGGGCTAAACAGAGAAACCCTGTCTCGAAAACAACAACAACAACAACAACAACAACAACAACAACAAAAACAAACAAACAAAAAAAAGAAAGAAAGAAAAAAAGAAGATTCTGCAGTTATTTGAAATTTTTTGTTTGTTTGTTTGTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCTCCTGCCTCTGCCTCCCTAGTGCTGGGATTAAATCTATTAATCAAATAATCAGATAAAATGGATAGGATATAACATAAATGAAGGGAAACAAGGTAAAATCTAGAAAGCAAAATATAGATCGAAGCCTGGAAAACATAAAAGGAAAAATCGTTGTCCCAGGTAGGGAAAATTAAAGGAGAATAAGTTCTCATTTTTGGAACAACTCAATTTGTGAGGAAAGCAGTTTATAAGTGGATAATGCTCATCAGGAAGAGAATCTGTCACATTTTGAGGCTGAAGTCCGTCCCTCAGAAGAGTGGCTGCTTCTTTGAACAAAGCTGCAGTCCCCTGTTATGTCTGCTGCTCTCTTAGGCCTTTAGGTCTTGCTGAGATCAGTAAGTGCTTACACTTTAGTATCTCAGTCTTTACTCTGTGTGCTACAATGCAGGGAATAGTCTTTACGTGGTCAATTGGTGAGTTATAAAATACAAGTAAACAGTCAGAAAGGAAAGAAAAAGAAAAAAAGAAATAAATGTCTCTCCTTTCTCGAATGTATAAACTTTTAAAGTGACTATTTTCATTATAAAAAATCATGACAATATAATCCCTGCAAGTGTCTTTGTTGTACTCGTATGTTCCTGGTACTGGACGTTGTGGCCACTTGATGACTAGATTTCATCTTAGCTATCAAACACAGTTACGTGTGACCTATCTGAAACACCCTGATAGGGGACAGCCCAAAGAAAGGGAACTGAGTGCTCCTTCCAGAGTTGAAGCACAAGATATTCCCTCCAAGTCTCTTAAAAAAGAGGAGAGTTACTCAGCATACATAGCTAGGAACTAGACTGAGGATTATAGTAAGCAAAGACATTCCCAGATGGGATGCAGCTGAGCAGTAGTTAATTAATTTGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGAAGAGAAGAGAAGAGAAGAGAAGAGGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAGTACTAAAGAATCACGAGAGGTGAGTGGCTACTTCCAGTGTGTGGAACAACTTGATCCTTACTTGATCCAACTTGATCCTTGTACTCTCGAGTCTAAACTAGAGTTGTTGTAACATACCCAAGCATTATAAAAGGCAATTTCTTGAGGACTAAACACAGGGTACTGTGGCATCTGCTAATTAATGAGACCTAGTCCATGTCTTCCGACAACAGTCATAAGGTCATGATGGTCCCAAACCATCAATCATATCTCCTTGTTTAACTTTTGAATAAATGTTATTTAATAGATGTTATTTTGAACAAGTAACAGTATTCTTGCACTGCTAATGCTGATTGAGTAAAGAAAGACATGCTCCAATCATTTAGAATCTTGTTGAGAACATTTCTGCTTTTTCTGCCCTTCCTGCTATAAAATAACATTTTTCAGTTGATAAAAGTGGTACTCATGAATTTTCTCTCCAGTGACTCTCTAAGGCGGGAACACTCAGGAGCGCACAGGCCTCAGAAGCAGTAGAGCATCTGGGACAGGGTCCTAAGGGCTTACATCTGCACCCAGGAGGTGGGGCTGTTCCATAGCCCTCTGTGCACCTTCCTTGCCAGGAGAGAGCTTGCCTCCAGGGAGTGCTCTGACCCCTGGACTCACTGGAGATTACCATTTTCTCTCCAGTGACTCTCTAAGGCAGGACCACTCAGGAGTGCATAGGCCACAGAAGCAGCTGAATCAGGGTCCTAAGGACCTTCATCTGCACCCCGGAGGTGGGACTGTTCCACAGCCCTCTGTGCACTGGTCTGCCAGGGGAGAGCTGGTCTTCCAGGAGTGTTGACAGGAGGAACAAGCTCCAGCCAGAGATAACAAGAACATCTAACACCAGACATTACCAGATGGAGAAAGGCAAATGCAAGAATCTTACCAACATTAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAAAATGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTGGTACAATCACTCTGGAAATCAGTTTGGCGGTTCCTCAGAACATTGGACATAGTACCACTGGAAGATCCAGCAATACCACTCCTGGGCATATACCCAGAAGATGTCCCAACTTGTAATAAGGACACATGCTCCACTATGTTCATAACAGCATTATTTATAATAGCCAGAAGCTGGAAGGAATCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAGTGGAGTACTACGCAGCTATTAAAAGCAATGAATTTATGAAATTCTTAGGCAAACAGATGGAACTAGAAAATATCATCCTGAGTGAGGAAACATAAAGAACACACATGATATGCATTCACTGTTAAGTGGATATTAGCCCAGAGGCTCAGAGTACCCAAGATACAATTTTCAAAATACATGAAACTCAAGAATAAGGAAGACCAGAGTGTGGATACTTCGATCCTTCTTAGAAGAAGTATTCACACTTTGGTCTTCCTTCATTCTTCCTTCAACAAGTATTCATTGTTTTTAACAGCTGCATAGTACTCCACTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGACATCTGGGTTCTTTCCAGCTTCTGGCTATTACAAATAAGGCTGTTATGAACATAGTGGAGCATGTGTACTTATCACCTATTGGAGCATCTTCTGGCAACAAAATACCCATGAAAGGAGTTACAGAGACAAAGTATGGAGCAGAAACTGAAGGAATGACCATCCATAGACTGCCCCACCTGGGGATTCATCCCATATGCAACCACCAAATCCAGACACTATTGTGGATGCCAACAAGAGCTGGCTCACAGGAGCCTGATATAGCTGTCTCCTGAGAGGCTCTGCCAGTGCCTAACAAATACAGAAGTGGATGCTCACAGTCATACATTGGACAGAGCACAGGATCTCCAATGAAGGAACTAGAGAAAGTACCAAGGAACTGAAGGGGTTTGCAGCCCCATAGGAGGAACAATAATATGAACTAACCAGTACTCGCAGAGCTCCCAGGGACCAAACCACAAATCAAAGAAAACACATGGTGGGAATCATGGCTCTAGCTGCATATGTAGCAGAGGATGGCCTAGTTGGATATCAATGGGAGGATAAGCCCTTGGTCCTGTGAAGGCTCTGTGCCCCTGTGTAGGGGAATGCCAGGACCAGGAAGCAGGAGTGGGTGGGTTGGTGAGCAGGGGGAGGGAGAAGGGGTAGGGGTAGGGGGGTTTTGGAGGGGAAACCAGGAACAGGGATAACATTTGAAATGTAAATAAAGAAAATATCCAATTTTTTAAAAGTGGTACTCACTTCATCTTCATGTTCTTGCTGAATTGTCTCTAG
Seq C2 exon
ATGCCTGTGAACTACCACGGCCATTTGAAGCTATGGAACTCAAGGGTACACCTAAACTCTTTTATGCCGTTGGAGAGAAAATAGAATATAAGTGTAAAAAAGGATACCTGTATCTGTCTCCATACCTGATGATTGCTACCTGTGAGCCAAATCATACATGGGTCCCTATTTCAGATGCTGGTTGTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000016493-Cd46:NM_010778:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008415=Sushi=WD(100=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: