MmuINT0032743 @ mm9
Intron Retention
Gene
ENSMUSG00000027330 | Cdc25b
Description
cell division cycle 25 homolog B (S. pombe) [Source:MGI Symbol;Acc:MGI:99701]
Coordinates
chr2:131019851-131020173:+
Coord C1 exon
chr2:131019851-131019913
Coord A exon
chr2:131019914-131020074
Coord C2 exon
chr2:131020075-131020173
Length
161 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGC
5' ss Score
4.95
3' ss Seq
ACTCTAATGGCCTCCTACAGATG
3' ss Score
6.85
Exon sequences
Seq C1 exon
GCCTTCCTCCTGCAGACCGTGGATGGCAAACACCAAGACCTTAAGTACATCTCACCAGAAACT
Seq A exon
GTAAGCAGGGTTGAGCCACTCTCCAGGTGCATTGGGGACCACCTTTTCTGGCTCTTGTCTTCCCTTGGGGTTGGGCTGCATGCACAGACCATCAGAAAAGAGAGGGAAAACCTTGGCTACCAGCCTCACCTGCTGGCACCAACTCTAATGGCCTCCTACAG
Seq C2 exon
ATGGTGGCCCTGTTAACAGGCAAGTTCAGCAACATCGTGGAGAAATTTGTCATTGTGGACTGCAGATACCCCTATGAGTATGAAGGCGGGCATATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027330-Cdc25b:NM_023117:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0058115=Rhodanese=PU(25.0=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCTCCTGCAGACCG
R:
CTTGATATGCCCGCCTTCATACT
Band lengths:
162-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: