GgaINT0090387 @ galGal3
Intron Retention
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:481554-481812:+
Coord C1 exon
chr2:481554-481616
Coord A exon
chr2:481617-481713
Coord C2 exon
chr2:481714-481812
Length
97 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TTTTTGTTTGCTTTTTGCAGATT
3' ss Score
10.72
Exon sequences
Seq C1 exon
GGTTATTTGTTCCACACTGTTGATGGGAAGCATCAAGATTTAAAATACATCGACTCAGAAATG
Seq A exon
GTATGTGCTCTGGGGACGGCGAGACGTTCTTTACTTAAATAATAAAAATAACCCTGAAAACAATTAAACTGTGCTTTTTTTTGTTTGCTTTTTGCAG
Seq C2 exon
ATTGTGTCTGTCCTGACTGGAAAGTTTGCAAGCTTCATTAAGGAGTGTGTGATCATTGACTGTCGCTATCCGTACGAGTACGAAGGAGGACACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934:ENSGALT00000007893:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0058115=Rhodanese=PU(26.2=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTATTTGTTCCACACTGTTGATGG
R:
GATGTGTCCTCCTTCGTACTCG
Band lengths:
159-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]