BtaINT0034903 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52261029-52261285:+
Coord C1 exon
chr22:52261029-52261091
Coord A exon
chr22:52261092-52261186
Coord C2 exon
chr22:52261187-52261285
Length
95 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
CCTTGGCTCTTTCTCCACAGATT
3' ss Score
12.02
Exon sequences
Seq C1 exon
GGTTACCTCTTTCATACCGTTGCTGGAAAGCATCAGGATTTAAAATACATCTCTCCAGAAATT
Seq A exon
GTAAGTTATCCTTTGGGGATCTGCCACCCATGCGATACTGGGATCTAGTCATTCCTCGCAGCCAGAGGTGACTCTCCTTGGCTCTTTCTCCACAG
Seq C2 exon
ATTACATCTGTTTTGAATGGCAAGTTTGCCAACCTCATTAAAGAGTTTGTCATCATCGACTGCCGATACCCATATGAATATGAGGGAGGCCACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586:ENSBTAT00000012611:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0058115=Rhodanese=PU(25.9=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCTTTCATACCGTTGCTGG
R:
CTTGATGTGGCCTCCCTCATA
Band lengths:
159-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]