HsaINT0031532 @ hg38
Intron Retention
Gene
ENSG00000164045 | CDC25A
Description
cell division cycle 25A [Source:HGNC Symbol;Acc:HGNC:1725]
Coordinates
chr3:48165636-48165893:-
Coord C1 exon
chr3:48165831-48165893
Coord A exon
chr3:48165735-48165830
Coord C2 exon
chr3:48165636-48165734
Length
96 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
CCCTAATTTTCTCTCAACAGATG
3' ss Score
11
Exon sequences
Seq C1 exon
GGTTATCTCTTTCATACAGTTGCTGGGAAACATCAGGATTTAAAATACATCTCTCCAGAAATT
Seq A exon
GTAAGTCCATCCTTTTGAAACCCACCACACATCGGGTACTTGAATCTAGTTTTCCCTGACGGTCAAAGTTGATTCTCCCTAATTTTCTCTCAACAG
Seq C2 exon
ATGGCATCTGTTTTGAATGGCAAGTTTGCCAACCTCATTAAAGAGTTTGTTATCATCGACTGTCGATACCCATATGAATACGAGGGAGGCCACATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164045:ENST00000302506:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0058115=Rhodanese=PU(25.9=84.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATCTCTTTCATACAGTTGCTGGGA
R:
TTGATGTGGCCTCCCTCGTAT
Band lengths:
159-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development