MmuINT0032757 @ mm9
Intron Retention
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34894373-34895123:-
Coord C1 exon
chr18:34895025-34895123
Coord A exon
chr18:34894507-34895024
Coord C2 exon
chr18:34894373-34894506
Length
518 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
GCTAACATTCTTCTCTGCAGGGA
3' ss Score
8.1
Exon sequences
Seq C1 exon
GTGGCTGCTTTGCTGTCTGGAAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGCTATCCGTATGAGTACCTGGGAGGCCACATCCTG
Seq A exon
GTGAGATTACATCGTGAGCACTGGGAAAGGAGAGGCTGCGGATTCGCTTTTACTGAGAAGAGTGTGGGCAAAGGGTCCTGTGAGCTCCAGCGCTAGGCCAGAGATGATACATTTGGATCCCATCAAAGGAAGTCCTTATTCCCACTGTAACCCTGTGTACCTTGAGCAGTCCCTTTCCCTCCTTGACGGTCTCCCTCCTTCCTGTGCGAGCCTAGGAACCCTAAAAACCATCCGGGAACCAGGTAGCACTTTGCAACCATTTAATGTTCACAGACAGTTCTCATAGTTTATCCCGTACCCTGGGTGGCTCAGTTCTGTGAATATTTATTGAGCAGCTACATAGCAAAGTCTGTGCCAAGCCCTGGAGTAGATACAGAGGGAGGCTTAGGTTCCCACCCCGGAACTCCTTGTTGCTTGGTTTTTCTGGCCTCAATGTCCCAGAAAAGTATACCAGTCATTCCCGAGTACTGACTGTACACAAGCCCTTGAGGAATACTTGCTAACATTCTTCTCTGCAG
Seq C2 exon
GGAGCCTTAAACCTGCACAGTCAGAAGGAACTGCATGAGTTCTTTCTGAGGAAGCCTGTTGTTCCTCTGGATATCCAGAAAAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCCGAGAGAGGCCCTCGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-Cdc25c:NM_009860:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
NA
C2:
PF0058115=Rhodanese=FE(40.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTTTGCTGTCTGGAAA
R:
ATTCGAGGGCCTCTCTCGG
Band lengths:
231-749
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: