RnoINT0032533 @ rn6
Intron Retention
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27531160-27532033:-
Coord C1 exon
chr18:27531935-27532033
Coord A exon
chr18:27531294-27531934
Coord C2 exon
chr18:27531160-27531293
Length
641 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GCTAACATTCTTTTCTGCAGGGA
3' ss Score
7.81
Exon sequences
Seq C1 exon
GTGGCTGCATTGCTGTCTGGGAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGTTATCCGTATGAGTACCTGGGAGGACACATTCTG
Seq A exon
GTGAGGTTACATCGTGGGCACTGGAAAAGGAGAGGCTGCAGATTCGATTTTATTGAGAAGAATGTGAGGGCAAAGGGTCCGTGAACTCTAGCACTAGGACAGAGATGATTGATACATTCAGACCCCATCAAAGGAAGCCCTTATTCCCATTGTAATCCTGTGTACCTTGAGCAATCCCTTTCCCTTCTTGACAGTCTCCCTCTTTCCTGTGAGACACTATGAAACCTAAAAACCAGGAAGTAGTTTGCAAACATTTAATGTTCATAAACAGTTCTCGTGGTTTATCCTGTACTCTGGGTGGCTCTGTTTTGTGAATATTTATTGAGCAGCTACATAGCAAACTGACAAATCCTGGCGTAGGTACAGAGGGAGGCTTAGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTCTTTTTTTTTTCGGAGCTGGGGACCAAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCTCTGAGCTAAATCCCCAACCCCGAGGCTTAGGTTCTTAACCTGGAACTCCTTGTTGCCTGTTTTTTCTGGCCTCAATGCCCCAGAAAAGTATCCCAGTCATTCCCGAGTACTGACTGTACCCAAGTCCTTGAGGAATACTTGCTAACATTCTTTTCTGCAG
Seq C2 exon
GGAGCCTTAAACCTGTACAGTCAGAAGGAACTATACGAGTTCTTTCTGAAGAAGCCTGTTGTCCCTGAGGACACCCAGAAGAGAGTCATCATTGTGTTCCTCTGTGAATTCTCCTCAGAGAGAGGCCCACGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008:ENSRNOT00000037368:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0058115=Rhodanese=PU(25.0=81.8)
A:
NA
C2:
PF0058115=Rhodanese=FE(40.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCATTGCTGTCTGGGAAG
R:
ATTCGTGGGCCTCTCTCTGAG
Band lengths:
230-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]