MmuINT0032924 @ mm9
Intron Retention
Gene
ENSMUSG00000024769 | Cdc42bpg
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:MGI Symbol;Acc:MGI:2652845]
Coordinates
chr19:6322254-6322678:+
Coord C1 exon
chr19:6322254-6322371
Coord A exon
chr19:6322372-6322554
Coord C2 exon
chr19:6322555-6322678
Length
183 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
GTGTACACTGTTCCCCATAGGCT
3' ss Score
9.06
Exon sequences
Seq C1 exon
GGAGATGCTGAAGGACCCTTTTGTGCGCTCCAAGTTCATCTCGCCGCCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTACGGAGGGAAGGCCCAACACCAGGGATGGGACCCGG
Seq A exon
GTGAGTCCTCTGTAGCCAATCACAAAACTCCCTGTAGTCGTTGGTCCAATCACAGGCTTCTGTTGATTGCTTGCCTGCTGAGGCAGATGACTCATCCCTCTGACGCCTGGACCTCATTGCCAGTAGCTGAGTTCCCATGGTCTGAGCTTCCTGGTCCTAGCCCGTGTACACTGTTCCCCATAG
Seq C2 exon
GCTCAGGAACAGAAGAGCAGAGGTGCCCGCAGCTCCGGGCCGCAGCGGCCCCACAGCTTCTCAGAGGCATTTCGGCGGCCAGTGTCCACGGGCAGTGATGGTCTCCCTGGAGAAACAGACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024769-Cdc42bpg:NM_001033342:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PU(79.4=67.5)
A:
NA
C2:
PF0078623=PBD=PD(14.7=11.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTGAAGGACCCTTT
R:
ATGGGTCTGTTTCTCCAGGGA
Band lengths:
242-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: