BtaINT0035101 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009736 | CDC42BPG
Description
CDC42 binding protein kinase gamma (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr29:43680746-43681116:-
Coord C1 exon
chr29:43680996-43681116
Coord A exon
chr29:43680870-43680995
Coord C2 exon
chr29:43680746-43680869
Length
126 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTCGCGCTGTCCCCTAACAGGCT
3' ss Score
9.21
Exon sequences
Seq C1 exon
GGAGATGCTGAGGGACCCTTTCGTGCGCTCCAAGCTCATCTCAACACCCACCAACTTCAACCACCTGGTGCACGTGGGCCCTGCTGACGGGAGACCCAGCGCCAGGGACCTGCCCCCGGTG
Seq A exon
GTGAGTTATGAGTCCTCCGGAGCCCATCAGCAGCCTCTCCTTACCTGGGTCCCTGGACCTCCGCACGTCCAGGCCACGTGCAGTTCGTGTGACCCGGTCCCAGCCCTTCGCGCTGTCCCCTAACAG
Seq C2 exon
GCTGCGGAAGTGAAGGGACGAGGTGCCCGCGGCTCTGGCCCGCAGCGGCCCCACAGCTTCTCCGAGGCCTCGCGGCGCCCAGTCTCCATGGGCAGTGACGGCCTCGCTAAAGATGCAGACCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009736:ENSBTAT00000034021:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.683 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=WD(100=65.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGCTGAGGGACCCTTT
R:
GGGTCTGCATCTTTAGCGAGG
Band lengths:
243-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]