GgaINT0056385 @ galGal4
Intron Retention
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49816627-49817949:-
Coord C1 exon
chr5:49817832-49817949
Coord A exon
chr5:49816742-49817831
Coord C2 exon
chr5:49816627-49816741
Length
1090 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
AACAAAGTGTTTCATTTCAACTG
3' ss Score
-2.97
Exon sequences
Seq C1 exon
GGAAATGCTTAGAGATCCGGAGCTGAGGTCAAAGATGATTTCTAACCCAACGAATTTCAACCACGTGGCTCACATGGGACCAGGAGATGGAATGCAGGTTCTCATGGACCTCCCGCTG
Seq A exon
GTAAAATACATTTGGAAGGGAGGGAGATGTATGTGCACGTGCAATTGCTCAGGAATAAGAAAAGATGAAAATTTACTGTGTAGGGTTCAAATACTATCTAAGTACCAAATTTTTCTTCTAGACGTTTTGAGAAAGGTGAACCTTCCTTATTTATGTGCAGTGGCTGTAAATTCCTCTGCACGGAAATACTATTTGCTGCCTTAAGAAGGAGACACTGAGAGAAGTAGATATCATTGCTGGGAGCTTGTTGGTAGTTATGTAAATAATCAGTCTCTCCTCCTTCCTTTTTCTTGTTTGTCACCTTAAAATAACAGAATGGATTTCCTTCCCCCTCATCCTCTCGACATTCTGGTCTCATACCACCTCCAGCAGGCTTGGAGCATGTCTTTCACAAGCTCTGTGTCCACTGAAATCCTTTTCCAGAGTGACCATTCCTCACTGCAAGGCTCCCCTCTGCTTTCTTCCTCTTCCTGTTCCTCCTCTGCTTCCCTAGCAAGGGTAGGAGTAGCTGCACGCTGTCAGAAATGAGAATGGTGTGCTTGTGCCATTTGGACAATTGCAGAGGAAAAAAAAGGGTGGGGGGCAGTGAATGCTTTGGAAGGTAACTAAAGCACATGCAAGTTTGCAGCACTATTTTTTGGTTTGCATTTAACATACACAGCAGTGTGAGCTATTTGATAGCTAAATCTCCAAGAGCAAGGTGCACAGGTACACTTCTGAGGCTGCGTCCCTTCCATTTTATAGCTGCTAGTCAGGGTTTTTCTTGTCTTTCACTAGCTTCTGTAAGGATAATGCATTCATCCTTTCAGCAGGAGGAGGAAGGAAGCAGAGCTATTGGCACAGTCGCTGCCCCTTCATAGAGGGTTAGCTGGCTGACAGGTTCCAATGGCTGCAACGGGGCTTAGTTCTTTCTCTGTCTTTCTCAGGGTTTGTGTCTGTTACTGAAAATATGTGGATGTGGTCAAGTAAGTTCAGAGTTTTTCTACCAACACCGAGTTGTAATAGCTTCAAAAGCACGGCAGAATTTTCACGAGTAGCAACCTCTAGTTGGATAGCTTCTGTTGCTGGCTAACAAAGTGTTTCATTTCAA
Seq C2 exon
CTGCAGAGCGTCTTACCTGCTGCACAGGATGAAAAACCATGTCCGTCTACAACTAACCTCTCACGGCAGCAACAGCAGCAGAGAAGCAAAACCTATATTTCGTGGCCCTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432:ENSGALT00000018644:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PU(40.9=67.5)
A:
NA
C2:
PF0078623=PBD=PD(56.1=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAATGCTTAGAGATCCGGAGC
R:
ATGAGGGCCACGAAATATAGGT
Band lengths:
230-1320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]