BtaINT0035067 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016456 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr21:69282447-69283024:-
Coord C1 exon
chr21:69282907-69283024
Coord A exon
chr21:69282557-69282906
Coord C2 exon
chr21:69282447-69282556
Length
350 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
ACGCACTGCTCTCTGCGCAGAGC
3' ss Score
7.95
Exon sequences
Seq C1 exon
AGAGATGCTGAGAGACCCGGAGCTGCGGTCCAAGATGATCTCCAACCCCACCAACTTCAACCACGTGGCCCACATGGGCCCGGGCGACGGCATGCAGGTGCTCATGGACCTGCCTCTG
Seq A exon
GTGAGCCCCGGCCGCCCCCACCACACCCCTCCCCGCGGCTCCCTAAGGGTCTGCGGCCTTCACCGCTTCTTACGGTGTCCTGAGGAAATCGCTGTCAGAAATGACAGCTGGAACAGCGCAGTAAGGGCAGGTGGCGTACTGCCCTCACTCACCGCCAGTTCTTAGCCCACAGCTGGCCCAAAGCAGCTGTCCAGAGGGCTTTCCCAGCCTGTTTCCCCACGGAGGCCCAGGGCCTCCGCCTGCTGCTGCCGCAGGCTCCACACGTGGCCTGCACGCTCTGCCCGGGGCCTGGCTGCCCGCTTCCGGCAGCCGGTGCGTGCTCCCGAGCTGACGCACTGCTCTCTGCGCAG
Seq C2 exon
AGCGCCGTGCCCCCCGCCCAGGAGGAGAGGCCGGGCCCTGCCCCCGCCAGCCTGTCCCGCCCACCTCCGCCCAGGAACAAGCCCTACGTCTCGTGGCCCTCGTCAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016456:ENSBTAT00000021879:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PU(73.0=67.5)
A:
NA
C2:
PF0078623=PBD=PD(21.6=21.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTGAGAGACCCGGAG
R:
CTGACGAGGGCCACGAGA
Band lengths:
223-573
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]