HsaINT0031698 @ hg38
Intron Retention
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102938306-102939727:-
Coord C1 exon
chr14:102939610-102939727
Coord A exon
chr14:102938412-102939609
Coord C2 exon
chr14:102938306-102938411
Length
1198 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
3' ss Seq
GTGTTGCTATTTCTGCCCAGAGT
3' ss Score
6.06
Exon sequences
Seq C1 exon
AGAGATGCTTAGAGACCCAGAATTGAGATCCAAAATGATATCCAACCCAACCAACTTCAACCACGTGGCCCACATGGGCCCAGGCGACGGCATGCAGGTGCTCATGGACCTGCCTCTG
Seq A exon
GTGCGTGCACGGCCGGGATAGGGCGGGCAGGGCACCCCATCTCCTCCTCCCCGCTCAGGCAGCCATGCTGGCTGAGACTGTCCCAAAGGCAGTGCCTGCGAGGCTGGCGCTGTGCTCTGACCTGGCGCTCCTGTCACACAAGCCCGTCTCCGCTGAAGCTCTGTTCACGAGCACTTACCCTGTCACAAGGCCTTGTGCACAGGCCTCGGGCCGCCCTGGGCAGTGATGCTGCAGGTACTTGTGAGAGTCCACCACGTTTCGGCCTGTGAGGGCTTCCTAAGGACGTTTGCCATGAGGTGGTGATTTCTCAGTAACACCTTCGTACCAACAGATAGCATACTTTCTCTTTTTTACTTAAGAAGTATGTTTTTGGCTGGGCGTGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACAAAAAGAAATTAGCTGGGTGTGGCGGCAGGTGCCTGTAGTCCCAGCTACTGGGGAGGCTGAGGCAGGAGAATGGCATGAACCCGGGAGGCGGAGCTTGCAGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCGTCTCAAAAAAAAAAAAAATTATGTATTTTAGGCTGGGTGTGGTGGCTCATGCCTCTTAATTCCAGCACTTTGGGAGGCCACAGTGAGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGAGAAACCCTGTCTCTACTAAACTACAAAAATAAGCTGGGTGTGATGGTGGGCATCTGTAATCCCACCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGTCATTGCACTCCAGCCTGGGGGACAGAGCAAGACTCAGTCTCAAACAAACAAACAAAAAAAGTACGCTTTTTATAGGATTTGACCTGCCCTGAAGTTGCTATTGCCAGTTCTTAGTTCCAGACTGTCCAGAACCCTTGTCCAATCCAGAGAGCCCTCTTGGCCCCCATTTTGCTCATCAAGGTCACGAGGCCACAGCCACCGTAGGTTGCACAAACTTCGCAGCCGGCCCTGCCGGGTGTCAACCAAGCATGCTCACGTGTTGCTATTTCTGCCCAG
Seq C2 exon
AGTGCTGTGCCCCCCTCCCAGGAGGAAAGGCCGGGCCCCGCTCCCACCAACCTGGCTCGCCAGCCTCCATCCAGGAACAAGCCCTACATCTCGTGGCCCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752:ENST00000361246:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PU(64.3=67.5)
A:
NA
C2:
PF0078623=PBD=PD(31.0=36.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGATGCTTAGAGACCCAGA
R:
TGATGAGGGCCACGAGATGTA
Band lengths:
223-1421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development