RnoINT0032662 @ rn6
Intron Retention
Gene
ENSRNOG00000009675 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:RGD Symbol;Acc:621753]
Coordinates
chr6:135750877-135751620:-
Coord C1 exon
chr6:135751503-135751620
Coord A exon
chr6:135750983-135751502
Coord C2 exon
chr6:135750877-135750982
Length
520 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
3' ss Seq
ATGCTGCTCTCTTCCCCCAGAGT
3' ss Score
10.8
Exon sequences
Seq C1 exon
AGAGATGCTCAGAGACCCGGAACTGAGATCCAAAATGATATCCAATCCGACCAACTTCAACCACGTGGCTCACATGGGCCCTGGCGATGGGATGCAGGTGCTCATGGACCTGCCTCTG
Seq A exon
GTGCGTGCTCAACCAGGCAGCGGGCGTGGGGCTCAGCTGGGGGCGGCGTGCTCAGTGCTGGGCAGGGGGCTCAGTGCGACATGAGGCTCCTCCGTGCGTGGGCGTGGGTAGGCTCCGTCCCCTGCTGTGCAGGCACAGGTAGTGTCTGGCTGCCTGTCCTGCCTCATTGTGCCCTGCTGACCTGGGACACTGTGCATCACTCCTGATCCCGAAATGGACGTCTATAGGAGTGGCCCGCCTGTGTGCGCTGTGTCCCTTAGGAAACAGTTGTCAAGAAAGGGTCTCTAGCTCCTTGGTGTGAGATAACAGTTTTTCTCATTCTTTTAAACATTGCATTTTCTGTAGGGTTTTCTACATTGACATTGCTAGTTCTTAGCCCGGAGGCCTGGTTGCTGCGTCCCGTTCTTAGCCATAGCCAGGGCCTGCAGCTGGCCTGTTCATTGCCGCCACACTGTGGCAGCCCCACTGTGGTCCCGTCTTTGTTCTCATGCCAGTCTCACATGCTGCTCTCTTCCCCCAG
Seq C2 exon
AGTGCTGCGCCCACAGCCCAGGAGGAAAAGCAGGGTCCTGCCCCAACAGGCCTCCCTCGGCAGCTCCCATCCAGGAACAAGCCCTATGTCTCATGGCCGTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009675:ENSRNOT00000039059:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PU(58.7=67.5)
A:
NA
C2:
PF0078623=PBD=PD(37.0=47.2)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCTCAGAGACCCGGAA
R:
TGAGGACGGCCATGAGACATA
Band lengths:
222-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]