MmuINT0037305 @ mm9
Intron Retention
Gene
ENSMUSG00000037242 | Clic4
Description
chloride intracellular channel 4 (mitochondrial) [Source:MGI Symbol;Acc:MGI:1352754]
Coordinates
chr4:134779379-134782064:-
Coord C1 exon
chr4:134781939-134782064
Coord A exon
chr4:134779486-134781938
Coord C2 exon
chr4:134779379-134779485
Length
2453 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GTTTTACGTTTTCTGTTTAGGTA
3' ss Score
10.26
Exon sequences
Seq C1 exon
GAAACCTGCAGATCTACAGAACTTGGCTCCTGGGACCCACCCGCCATTTATAACCTTCAACAGCGAAGTCAAGACGGATGTGAATAAGATTGAGGAATTTCTCGAAGAAGTCTTGTGCCCACCCAA
Seq A exon
GTGAGTATCTGACCATTTGGACATACTGCCCCGCTTTGAAGCTTTGACCTTCTTGTCTCCGGACACTTTTTTCCTGAGGGACTTTAAATTCTCAGGGCCTCGATTGGAATAACCAGGACACGCTTGTAAGAGTAATGCTTAGTCAGTGGCAGAATGGGCTTTCTGCTTAGCCATACTAAGAAAGACTGGGGGCTGGTGTGATGGCTCAGTGGGTAAGAGTACCCGACTGCTCTTCCAAAGGTCTAGTGTTCAAGTCCCAGCAACCACATGGTGACTCACAACCATCCGTAACGAGATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAATTAAAAGAAAAAAAAAAAAAAGAAAGGCTGGGATCCGGCTAATCTGGCTATGGTGAGCAAGACAGGTTTCCAGTTGGGAAGTCTGGGTGGGCCAAGGTGCTACCAGCACTGCGATTTGCTCTCGGTTAGTTCTGAAGGGAGCTTTCTGAAGCAGTTATCTGGGATTCCTTAAGTCATTCCAAACATTTAAGTCCCACATGCACTGTACTGGTAATTAAAACTGCAGATAGAAGGTTTGTATTCAGCTTTCATTTTAAAGGTTATTAATTTTCTCTTAGGTTTTTCTATCTGAATTAAAATGTATTTCTTTTACTAAAGAAGTATTTATTTGTGTGTTTTATGTATTTGAGTGTTTTGTCTACATGTGTGCCTGCACACCAGATGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGTTGGGAATTGAACTCAGCACCCCTGGAAGAGCAGCTCTTGACTTGTGAGCTATCTCTTAACTTCAAAAAAGTGGTTGTTTTCAGTGTGAAGGGAATTCCAGAGATGCTGGCCTTGGGATTAGCTGTCTGCTCAGGTGGTGTGGTGTGTGTGTGTGTGCGTGCGTGTGTGCGTGGGTGCGTGGGTGCGTGTGGCGCGCAGGCACGAGCACACTACAGTTGGGAAAAGCATTCAGGTAAACTTACCATAGTGTTCATTGAGACGCCCGGTGTAATTGGTGTTGATGGGAGGAGTTTGCAGGGTTAAGACCTGAGAAATTGGAGACTAGGTGAACCTATTAAAAAGAAAGCCTGCCTGAGTTTTTAGAAGATAGTGATAGCCCTTTTCTGAATTCACAATAGCAAGCAGAAATGTAAATAAACCACTCTAATTCCAGCACTCAGAAGGCTAGGGTAGAAGGGTTGAGGTTGAAATTAGCCTGGAATATATATATATATATCAGTGTGTATGTGCGTGTGTGCGCGTGCGTGTGTGTATGTTTGTGTGTCCTTGTTTCACAACACAGAGTAGTTTTTTACTGCACAGAATACAGTTTAAGACCTTCAAATTTTGTTTCACCTTCATTTTAATTAAGGGAAATAGACCAGGTAACATCTTCCCAAATAAGTTGAAATGAGTTAGTTTAGTGTGAAATTTTACTTCACAGTCCATTTTCCAGAGCCTTCCAGCTGATTAATATTCTGCGACAGGGCTCAGGGTCTGAATGTCTCTAGCTCAGACTCTGAGGTGAAGCAAGCCCTTCCGCAGGCAGGAGGAGCAGCCAAGCCTTTTCCCAAGACTGTCCCCAAAACTGTCCACTCTCTGGAAGAAACACACTGAGTGTGTGTGATTGAAGTCCAAAGATGTGACGTGCGTGAGGGCGCACACCTCTTTCAGAATGGCGTGTCCTGCCTTCCTTAAGTTGAAAACTTGGTCACAGCACAGAGGAAGACTCAGTATGATGTCTGAGGTCCTATTTAATCTGTCTATTGCATAGCATTCTGTCCCAAATATACCCTAGCCTCTTTAGCCCAGAGGGAGTGGGAAAGCCTGGCGCTGGTTGGCAGTGAGTGGTCCACCTCCTCCTGTTTTTGTCCTCAGCCGGCTGTGGATGATCAAGATGCTTGACCAGCCCAGGCTCCTCTGCTGTCTGGTTCCCTCACACTGCTGCACAGGGTCAGGCCAGTGCCTGCATACTAAGCAGCCAGCTGTGAGAGTCCTCGGGTGCTGAGGCTAGCGCTTTATGCCGCTGCAGCTCTTTTAAAGTGTCTTCTGATCGCCTCCTTGCACCAGTGGTCGCCATGTTGGACGTGAAGATGCAATACATTCCATCCCTTGACAAGCCGCCATTTCCTTAGCACTCTGATCATTAAATGGAGGTGGGAGTGAATGCCCTTGGATTGCCAAGAATATTAATAGGCAAACCAAAACACCATGCAGAGCTTTGTTTCCTAAGGGGGAAAACATTTAAAAAGTGCCATAGAAAACAGATGGTGGCGTTTCTCAGATCAGTCACTGTCTGAAGAGGTCTGTAGTCAGCGCAGTGGTTTGCTGGTGATAGAACTTCAGCTGATGTCACCTGGAAGGATCTATAATGCAGTTTTACGTTTTCTGTTTAG
Seq C2 exon
GTACCTAAAGCTTTCACCAAAGCACCCAGAGTCGAACACTGCTGGAATGGACATCTTTGCCAAATTCTCTGCTTACATCAAGAACTCAAGACCAGAGGCTAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037242-Clic4:NM_013885:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100)
A:
NA
C2:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(7.6=18.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: