MmuINT0041418 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:121985995-121986367:+
Coord C1 exon
chr6:121985995-121986112
Coord A exon
chr6:121986113-121986257
Coord C2 exon
chr6:121986258-121986367
Length
145 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
GTCACTAATTTCTTCTTCAGGAC
3' ss Score
9.09
Exon sequences
Seq C1 exon
CTAGACAACAATGGCTGCAGTACACAAGAAGTGAACATCACTGAGCTCCAATCAAAGAAAAGGAATTATGAGGTTCAGCTTTTCCATGTGAATGCAACTGTTACAGAAGAAGGGACAG
Seq A exon
GTATGTGGGTAACCAAAGAATATAGAAGATGAAGCTGTGAAAACTGACACGTTTTCACATCAAAATGGTGGTTCAAAGGACACAGAAAGCAAGCAACTCTCTAACCAACTTAGGCTTTCAATGTTGTCACTAATTTCTTCTTCAG
Seq C2 exon
GACTGGAGTTCAATGGATATGGAACAACTAAAATTGAAAGAATCACAAACAAGCTCATATTTCTGAAGGCAGATTCACACTTCAGACATGGGATTCCATTCTTTGTGAAA
VastDB Features
Vast-tools module Information
Secondary ID
-Cpamd8:NM_008646:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACAATGGCTGCAGTACACA
R:
TGGAATCCCATGTCTGAAGTGTG
Band lengths:
212-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: