GgaINT0103742 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NF29]
Coordinates
chr1:75735219-75735578:-
Coord C1 exon
chr1:75735464-75735578
Coord A exon
chr1:75735329-75735463
Coord C2 exon
chr1:75735219-75735328
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTACTGTGCTCTTTCTCAGGAA
3' ss Score
10.12
Exon sequences
Seq C1 exon
GCAGATGCTCATGGGTGTGTTTCTGCTGTGGTAAGGACCAAAATATTTCAGCTCCGGCGCAGGGGATATGAGATGAGCATTGAGGTGAAAGGCAAGATCACAGAAGATGGTACAG
Seq A exon
GTATGTGTCACATGGAGGTGGGAAATTAATGGTAGGCCACAAGAGGAGGGCTTGGCAAAGATGAAGAAGGTAGAATGACATGTCTAAAAATATTGAAGTTCATTAATAATCGCTCTTTACTGTGCTCTTTCTCAG
Seq C2 exon
GAATAGTTGTGACTGGAATAGGCTCCTGTGAAATCACATCCATCATGAGCAAAGTCAGCTTTGACCTGTTGGACTCTCATTACAGACCAGGGATCCCACTCTTTGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011926:ENSGALT00000019456:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGCTCATGGGTGTGTT
R:
AAGAGTGGGATCCCTGGTCTG
Band lengths:
218-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]