MmuINT0041932 @ mm10
Intron Retention
Gene
ENSMUSG00000027408 | Cpxm1
Description
carboxypeptidase X 1 (M14 family) [Source:MGI Symbol;Acc:MGI:1934569]
Coordinates
chr2:130394032-130394433:-
Coord C1 exon
chr2:130394310-130394433
Coord A exon
chr2:130394229-130394309
Coord C2 exon
chr2:130394032-130394228
Length
81 bp
Sequences
Splice sites
5' ss Seq
TGGGTACTG
5' ss Score
2.97
3' ss Seq
AAGCTTCCGTGTGTTTTCAGGCG
3' ss Score
7.7
Exon sequences
Seq C1 exon
CTGATGAAACAGGTGAATGAGCAGTGCCCCAACATCACGCGCATCTACAGCATCGGGAAGAGCCACCAGGGTTTGAAGCTGTATGTGATGGAAATGTCAGACCATCCTGGGGAGCATGAGCTGG
Seq A exon
GTACTGTTTGGTGGCATGGGAAGAGGTGGGCACAGGGCAGACGCTGGTGCGAGCTGACTCTAAGCTTCCGTGTGTTTTCAG
Seq C2 exon
GCGAGCCCGAGGTCCGCTACGTGGCTGGAATGCATGGGAATGAGGCCCTGGGGCGGGAGTTGCTTCTGCTTTTGATGCAGTTCTTATGCCATGAGTTCCTGCGAGGGGACCCGAGAGTGACTCGGCTGCTCACTGAGACACGAATCCATCTATTGCCCTCCATGAATCCTGATGGCTATGAGACTGCCTACCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027408:ENSMUST00000028897:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(13.3=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCAGACCATCCTGGGGAG
R:
ATTCGTGTCTCAGTGAGCAGC
Band lengths:
176-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types