GgaINT1010405 @ galGal4
Intron Retention
Gene
ENSGALG00000009693 | CPXM2
Description
carboxypeptidase X (M14 family), member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr6:31291731-31293161:-
Coord C1 exon
chr6:31293038-31293161
Coord A exon
chr6:31291928-31293037
Coord C2 exon
chr6:31291731-31291927
Length
1110 bp
Sequences
Splice sites
5' ss Seq
TTGGTTAGG
5' ss Score
1.27
3' ss Seq
CTGTCCTATGTGATTGCCAGGTG
3' ss Score
8.11
Exon sequences
Seq C1 exon
TTGATGAAAACTGTGAATAAAATGTGCCCAAACATCACAAGAATTTACAATATTGGAAAAAGCCACCAAGGACTAAAACTGTACGCTGTTGAGATTTCTGACAACCCAGGAGAACATGAAGTTG
Seq A exon
GTTAGGATTTAATCTAACTAATTCTGTTGGAGAGTGTTGGGCTTTGGTTTTTTGCTTTTTTTCTTTTTTTTCCCTCCTCATTCTCTCTATCTGCAGTAATTATCGCTGATGGAATTATATTCATGGCAGCAATGATTTCGAATGTATGTGGGAGGAACTTCAGTGCTGAGTTTCTAAAATGAGAAGAGTAGGATGAGCACAAACAGAAGGCATTTTGAATGTAGGATCAAATTCTTCAATGATAATGAGTTTTATTCTTTGCAGTAATAAAGTAGAAGTGAATCTTAGTGCTGGGGAATGGATTTCAGTGCTGAAGATTGTGTAGCTTTGGATGAAAATTTGCTTTTTTATATGGGATTGTATGCATTGCATGCAAAAGCAGGTCAAATCTCCCAGTATTCTTCCAGTGGTGAGTGTTGGGTGTTCAGTTTCCTACCCATAGGACAGATAATCATTCAGTCTGTGATCCCTCTGTGGATATGAATAAGGATCTCACTGTGTTGCTGTCCAGGTCAGGCATTGGTGTAAATGTGCTCTGCCATACCTGTGAATACCTGCTAAGTGCTCACCCCATGCATGGGAGGTGTTATCCAGGTGTTAACACCAGAATAATTCATCTCATGTCCTTGACCACCCAGTGCCTGAGATTGATGGGCTCAGCAAGTGGGAGGGTGGACCCGTCTACAAGCCAGAGGTTGTCCATTTTGGATCTGTTCTAGCTGGGGTTTGCAAGTGTTGTTCCTTCAATGGGCTTGGCCTTGTTGAACCTCATTGAGGTGGGTGGTGTTGACGTGGGCTGACTAAAAAGGCAGAGCCTGTGTGTACCACCGAGGCGATGCCGTGACTCGGATTTGAACCGAGGTTGCTGCGGCCACAACGCAGAGTACTAACCACTATACGATCACGGCGTGCTACCAGGGCTCTGATGCATAAGCCTGTTATTTCAGAGCATCTACAGAAAGTAATTATTTGATTATTATATGTTTCAGTTTATTATTTTTTTCAGTTAAGGCATTTCTCCACCCCACACTAAGTGAAAAGCTGCTGCTTGACATCTGTAGACCCTTCATTTGCTGCTCTGACTGCATTTCTGTCCTATGTGATTGCCAG
Seq C2 exon
GTGAACCAGAATTTCGGTACATTGCAGGAGCTCATGGGAATGAAGTGCTGGGACGTGAGCTGATCCTTTTGTTAATGCAGTTCATGTGTCAGGAATACCTCGCTGGGAACCCACGCATTGTGCATCTCATCGAGGATACCAGGATCCACCTTCTTCCCTCAGTCAACCCAGATGGATACGACAAGGCATACAAAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009693:ENSGALT00000015779:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(13.3=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAAAACTGTGAATAAAATGTGCCC
R:
CGCTTTGTATGCCTTGTCGTA
Band lengths:
318-1428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]