DreINT0027344 @ danRer10
Intron Retention
Gene
ENSDARG00000091726 | aebp1
Description
AE binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2390]
Coordinates
chr10:2801598-2802145:+
Coord C1 exon
chr10:2801598-2801721
Coord A exon
chr10:2801722-2801948
Coord C2 exon
chr10:2801949-2802145
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
ATCTCTCCTGGTTTTAAAAGGTG
3' ss Score
7.7
Exon sequences
Seq C1 exon
ATGATGAAGGTGATCAATGAGGAATGCCCTAATATCACCAGAATTTATAACATCGGGAAAAGCTTTCAAGGGCTGAAGATGTACGCCATGGAGATCTCAGACAACCCTGGAGAACACGAGCCAG
Seq A exon
GTAGACTACAATTTGGCTAATAATTTTGACCTTAAAATGGCTTTTAAAAAAAATTAAAAACTGCTTTTATTCTAGCTGAAATAAAACAAATAAGACAGAAATACTGTGAAAATTTCCTTGCCCTGTTAAACATCATTTGGGAAATATTTAAAAAAGAAAAAACAAATCAAAGGGGAGCTAATAATTCTGACTTCAACATATTCAGAAATCTCTCCTGGTTTTAAAAG
Seq C2 exon
GTGAACCAGAATTCAGGTACACGGCAGGGCTTCATGGGAACGAGGTGCTGGGCCGGGAGCTTCTGCTGCTCCTCATGCAGTTCATCTGCAAAGAATACAATGACGACAACCCGAGAGTGCACCGCCTGGTGGAAACGGTGCGAATTCATCTGGTGCCATCGCTAAACCCTGACGCCTATGAGCTGGCATACGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091726:ENSDART00000131435:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(12.2=100)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(19.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGATCAATGAGGAATGCCC
R:
GTATGCCAGCTCATAGGCGTC
Band lengths:
308-535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]