GgaINT0044133 @ galGal3
Intron Retention
Gene
ENSGALG00000007090 | CPN1
Description
NA
Coordinates
chr6:23449038-23451543:+
Coord C1 exon
chr6:23449038-23449520
Coord A exon
chr6:23449521-23451346
Coord C2 exon
chr6:23451347-23451543
Length
1826 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
3' ss Seq
TGCTGTGTTGCTCTCTCCAGTGG
3' ss Score
8.85
Exon sequences
Seq C1 exon
CCCGCTTCCAGCCCTTCGCTGCCGCCTCCCGGGGCGCGGGGTCCTGTTTGCCGTCCGGTTAATGAGTGAGCCGTACTCCGGACGCTTCCCCGACGGCGGAGAGCGGGCCGGCAGCGGACGGCCGGCAGAAGCATCCCTGCCCCCGCTCCCGCCGCCCCCCGCCCGCAGGTGCAGGGGGCTGGCACTTGGCGGGGGAACTGGAAAGAGCTGGTTCCAGTTTGCACTTTAGCTCCGGGCGGGGAGGAGGGAGCCGGGGGCCGATGGCGGGGTGGCTGCGGCCGCTGGCCGGGACCCTGCTCCTGCTCGAGGTGGCGGCTGCCGTCAGCTTTCTGCACCACCGCTACGAGGAGATGGTGCGGGCTCTATTTCGCGTGCAGAGCGAGTGTCCGTACGTCACCCGCATCTACAGCATCGGACGCAGCGTCGAGGGCCGCCACCTCTACGTGCTGGAGTTCAGCGACTACCCCGGCATCCACGAGCCCC
Seq A exon
GTAAGTACGGGGACGCGACGACCGGGACGGGGCGGCCCCGACAGCGTTACCGCTGCCACGCGGCACCACGGGGCACGGCCAGGAGCCGCCTCTCTGCCCGGGTGGGACTCCCGGTGCAGGAGCTCTGCTTTTGGGCACGCGGCTCCGGCGCGTACTTTGGCCGCAGCTTTGTTTATAAGTGCAGGATGACGCAGAACTCGTCCCAGCACCCACCTGCCCCGCCGCCCCGTTCTGCCCCAAAACCGGGCAGAGGTGGAAGGGAGGAGTGCAGCCCTTCCTTGTCCAGGCTGCACGGGGTGGTGCTGGGCCCCTGCGGATCTCCAGACACACACCTGGTGCCAAGTGGCCCCGCTGCACCTTGGCAGTAGCACACGGAGATCTGGGCAAGATTCTGCCTGCCTCCCGCAGTATCTTTTGTCTTCTCAAACCTTTGCTTGCTCATCAGTGTGGGGGCTGACACATCCAGGCAGCGTGGTCCCTTTACAAAAGAGTTCTGATAATGCCCTGCCAGCCTTTGCTTTGGCAGAGCCACAGGATTGCAGCTGGGGGGGCTGCAGGAGAGCACCAGGCAGAAGCTCAGCTTGACCTGCTCCTTCTGGCCACATGTATGGTGTCTTACAGACTCTGCAGGCTCCTTTGAAGCCCGTGGAAAGTAACTGCGAAAAGGACAGCTTTAAGTCAGTTGGTTCATATGCAGTAATTCAGTCTTCTGTGTCTGTGTGGATAATGTTTAGGGGTCTGTGTTTCAAGAAAGGTTGACGAGGCCTGCTTCATGCTCAAGGAAGTCCCTTTTTTTAAATGAAGTCCCTGCTGAGACCTTTTTTTAAATGAAGGCAATACATAACCCCAAGGTGTTTTTATAGATTTAATAACTGTATTACGTAATTAAGTCAGTTCTCAAGTCTCTTGAAACCTAACCAGGTCAACACACATCGCCCACTTGCAATGTCCTTCGCTGAGGCATGGCAATCCAAAGGTCACAGGCAACAAATATGGAAATACAACATCTTGTGCCAAAACTAGGATTGTTTTAGCATCTGTCTTCAGCATGTCTGGAGGCATTGAGATTTCTGAAAGTACTGTTGGGTTCTGAAAGCACTGTTGGGTTCTGGAAGCATAGTTGGGTTCTGGAGATGTGGTTGGGTTCTGAAGGCATCGTAGGGGTCTGGAGTCATGGTTGGGTGTCTGGAGGCATGGTTGGTTCCAGCAGCCCCATTGGGTTTTGGAGGCATTATTGGGCTCTGGAGCATGGTTGGGTTCTGGCAGTGTGATTGGGTTCTGAAGCCATTGTTAGGTTTTGGCAGTGTGGCTGGGTTGGGAAGATGTAGAGTTCTCCAAGCATGGTCGGGTTCTGGAAGCATTGTTGGGGTCTGGAAGCATTGTTGGGGTCTGGAAGCAGGAGGCACCACATGAGCAGGTGCCTTTTTTCCTCACATGGTCACAGACCCCAGAGATCACTGCTGGTGGCTGAAGCCTCAGCGCAGCAAGATCCTTGAGCTCTGCCTGCCAATGCCCTGTTTTGTCTGTACCTTTCATGTGAAAGCTGGGCTCCTTTTTTAACTGAATTCTCCCAGTATCTCTCACCCTGCCAACACTGGTTGTGTGCCCACTGCAGAGGCAAGCAGCAGCGCAGTGGTGAACCTGGGCTGTGGCAAAACAGAGGGCAGCCCACATGAGGACCATTCCACCATCCCTCACTAAATTTTGCATTTTCTGAGGGATGAGGCCATCTTATGCCATTCACTGGGGGACCCCTGGGCTCCCTGCAGTGTGAAGGAGATCCCCAGCCCCAGCTGATGGTGCTGCTGCTGTGTTGCTCTCTCCAG
Seq C2 exon
TGGAGCCAGAATTCAAGTACGTGGGGAACATGCACGGGAACGAGGTGCTGGGCCGTGAACTGCTGCTGCAGCTCTCCGAGTTCCTATGTGAGGAGTACCGGCGGGGCAGTGAGCGGGTCACCCGGCTGCTGCACGACACACGCATCCACATCATGCCTTCCATGAACCCCGACGGGTACGAAGTGGCTGCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007090:ENSGALT00000011482:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(14.7=58.7)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGCTACGAGGAGATGGT
R:
CTTGGCAGCCACTTCGTACC
Band lengths:
342-2168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]