HsaINT0040670 @ hg19
Intron Retention
Gene
ENSG00000120054 | CPN1
Description
carboxypeptidase N, polypeptide 1 [Source:HGNC Symbol;Acc:2312]
Coordinates
chr10:101835668-101841642:-
Coord C1 exon
chr10:101841160-101841642
Coord A exon
chr10:101835865-101841159
Coord C2 exon
chr10:101835668-101835864
Length
5295 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATCTTTTCTCTTCCTTGCAGTGG
3' ss Score
10.84
Exon sequences
Seq C1 exon
TGGGGAAGTGCAAAAAACCTTTCAAAAGGCTTTCCTGGATTAGAGAAAGAAAGGGAGTGAGGGAGGAGAGATGAGTGGCTATTCCAGAACGACATAAAGAATTTCCAGCCTTGGACGGACAGCTGGGAACGTCTTCCAATTTGGACTGGTGTTTACAAGCGGGAAGCTAGGTGGACCTTGGATTTTGGCGGGTGAAGAGGCTAGGTTGTTTAAGGAGGTGGGGCGCGTTTCAGTGGCTCTCTTTGAAAAAGCCCAGCAAGATGTCAGACCTGCTCTCAGTCTTCCTCCACCTCCTCCTTCTCTTCAAGTTGGTTGCCCCGGTGACCTTTCGCCACCACCGCTATGATGATCTTGTGCGGACGCTGTACAAGGTGCAAAACGAATGCCCCGGCATCACGCGGGTCTACAGCATTGGGCGCAGCGTGGAGGGGAGACACCTCTACGTGCTGGAGTTCAGCGACCACCCTGGAATCCACGAGCCCT
Seq A exon
GTAAGTTCTGAACAGCTCTTGAGGGTGTGTGGGGCAGGGCCTTTCCCTTGCAAATCCAGTAATTGGAGTGGTTTCTGGGGTGGTCCGTGGACGCCTCCGCCTACAAGGTATTATCTCTTTCTCAGCCTGTGCTATTTCCCTCTTAGCCCTCAAACTGCCACTGCCTCTGGGGAGCTATAACCCTCCTTCAGCCTTCAGATCTTTCCTCCTTTTTGGGTTCTGTTTGCTCAAAACTTTAATGGTAAAAGATGAGTCTTCTTCCCTGCTCATGTCCCATATCCCTTCATTTCCCCCATTTCCTTTCTTTTCCCCTTACTATTGTTCTGTCTTTCCCCACCCAATGGCTCAGGAGACATAGGCAAAAACAATGAGCCCTTCTAGTTCTGCCAGGAAACTTAGAAGGGTATAGGGGAATCTCTTCGGGGAGTGACAGTGTGGTATTCCAGAGAGAGTTTGGGGACTTGGGTGTCAGTTTTATTTACTGGATTCTTTTTTATTTTTTATTTTTTTGAGACGGGGTCTGGCTCTGTTGCCCAGGCTGGAATGCAGTGGCATGATCTCAGCTCACTGCAGCCTCCACCTCCTGGGCTCAGGTGATCCTTTCCCCTCAGCCTCCTAGGTAGCTGGGACCACAGGCATGCACCAATACGCCCGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCATCATGTTAACCAGGCTAATCTCAAACTCCTGGGCTCAGGCGATCCACCCACCTTGGCCTCCCAGTGTTGGGATTACAGGCGTGAGCCACCGCACTTAGCCTGGATTCCTTTTTTTAGTTTGTTTCTACTGTAAAAGCAATCCATGTTTGGATTAAAATTTAGAGATTAGATAAGGAAAAAAAATAATAAAACTCACCCCAAATCCCACCACTGTTAATGTATTGATGTATATCCTTCCAGACTTTTTTCTATGCATATTTAAACCCTGACTCAAACACATGTAATTGTTTCTATAAAAATGAAATTGTATTATAACTGCCCTTCTCATTTCACAATCTGTTATGGATAGCATCCATGTCTATAAGTGCAGATCTACATCACTGTGGTTTTGGCTGTGTAATAGCTCATTGCATGACTATGTTTAACTGTCCATATATTGATGGACATTTAAGTTGTTTCTAATTTCTCACTTCTTTCCTTACCAGTTCCTCCTTCAAACTCAACTTCAAATCTCCCTTTACCTCTTCGCTTCCACATCCCCTGCCCAAGTCCAGACTCCATCACAAGCTGCCTACATGATTGCACTGAACTCCCAACTGGTTTCTAACTTCATTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTGGAATGCAGTGGTGCAATCTCAGCTCACTGAAACCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTGCACTACCATGCCTGGCTAATTTTTTTTATTTTTAGTAGAGACGGGGTTTCACCGTGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCACCCGCCTTGGCCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGTGCCCAGCCAGGTCTCTAACTTCGAACTGCTGCACTCTGAATCTTCCATTTGGTACACAGATGCCAGAAAAATTTTCCTAAATCTTGACATAATCCCACTTTCCTACTTTAAAAGCCTCACACTCAATGGACTGGCCATGGGATTCAGAATATTGCATGGAGGAGGCTCATAGAAGGCCATGGGGTTACCTGGGATAATTGCCTCGCTTTGAAACTGCACTTCCATAGCAAGCAGCCTGCTGTCAATCAGATCATATGTTCACTGTGGAAGCTCGTGAGTGTTCATGGACATCATGGGGTTAGCCCCCCAACACTCCAAGCCCCCTTGTTGGTGCTCCTGTACTTTCTAGCTTTCAAGGCCTTCTTTGAAGCTTTTTCACAGGACTCTAGCCCTCACTGTTCCCTCTTTTCTCTGAAGCACTATAACTGCTATTCACCCATTCATTCCTTTAATTCATTCATTCCACAAATATTTACCAATCACCTACAATATGCAGGCACTTTTGTAGACTCTGGAAGTACAGCAGAGAATAAAACAAAGACCCTGCCCTCATGGGCCCGAATTCTAGTGGGGTAAGACTGACAATAAATGGGTAACTACGTAAATACATATTACATCAGATGGAAATAAGTGCTGTAGAGAAAACTAAATCAGGAAAAAGAGATAAGGATGGCATGGAGGAAGACAAGGAGGAGCAGGAGAGGCACTCAGGAGAGGCGTCTCCACTGAGGTGGCTTTGAACAGAGAGCTGAAGGATGGGTGTGATGGCACATGCCGTGCTGATATTGAGGAGGAAAAGATGACGGGCAGAGGGAAGAGCAAAGGCAATGCTCTGGAGCATGCTTGGCACATGTGAGGAACAGCAAGGGGGCCAGTGCGGCTCCAGCCGAGTGAATGAGGGGAGAGCAAGAGAGGAGGTCACAGCCATGTGATGGGGACACCAGGCAACAGGAGATCACGCAGGGCCTCATAGGCCCTGGTAAAGATCTGGGCTTTTACTTTGAGTCAAGTGAGAAGCCACTGGAGGGTTTTTTAAGCAGAAGGGGGAGACGATCTGTCTTAAATTTTGTAAAGATCACTCAGAACAGGGGTCAGCAAACTACAGCCCAAGGGCCAGCCACCTGTTTTGGTAAATGAAGTTTTATGGGAACATAATCACGCCCATTCACTTTTATCTTGTCCATGGCTGCTTTTGCTGGAAGAGTTGAGTAGCTGTGACAGAGACATCACGGCCCACAAAGCCTAAAGGATTTACTCTCTAGTTCTTTATAAAAAAGTTTTGCCAACCCCTGACTCTGGATAATAGACTTTAAAGGGGCTAGGCAGCTGCAGGGAGACCAAGTGGGAGATTTATTGCAATAACCTAATATTGCCAATAGTACCAAGCTTGAAGGTGCAGGGGCTTGAACCAAAATGGTAGCAGTGATTGTTATGAGAAGTGGTTGTGTTCCAGATATATTGAAAGTAGAGGCCAGCTGTGGTGGCTTATGCCTGTAATCCCAGTACTTTGGGAGGACTGCCTGAGGCCAAAAGTTTCAGACCAGTCTGGACAACATAGTGAGACTTGTCTCTGTAATAAATTTTTTTTTTAGAAAATTAGCCTCGTGTGGTAGTGTGCACTTGTGGTCCCAGCTCCTCAGGAGGCTGAGGCGGGAGGATGGCTTGAACTGAGAAATTCGAGAGGCTATCCTGAGCTATGATTGTGCCACTGCACTCCAGCATGAATGACTGAGCAAGACCCTGTCTCTAAATTAAAAAAAAGAAAAAGAAAAAAGAAAAAGGAGAGCCAAAAGAATCTGCCATTAAGCATCTGCTAAGTGCATGGCACTGTCCAAAGTTCTACAGGGCAGTGGTTCCCAGACTTACAGATTTCATAAAGAAGTTAAAAAAAGTGTTGTTGTTGTTTTTTTTTAAATAAATAGGAGACCGGAGGGAACTAAAACAGATCTTCCAAATTTTATTTTACTGAATAAGGATGTGAAGAAAACTACCTGTCATCTACTATATCCATCCTTTTCTAACAGAAAAGACATTTTAACACCAAGAAAAGTAAGAAAGACATAATCTATGATTTAAAAAAATACACTAAGATTAAAGAATACTCGCTATGGAAAATCCACCACATGATCCTTATGGATTATAAGCATTCCTTTGAGAAAAACTGCTGTAGGTATACTAAGATAAATAATAATGGATGGTGTCACAAGTTAAAAATTATGTACACTGCTAAGGCCAGGTCCGGAAAAGGAAATAGAACATATATAAAAATAGGTAAAACCCAGCCGGGTGCAATGGCTCACACCTGTAATCCTAGCACTTTGGGAGGCCAAGGCGGGTGGATCACCTGAAGTCGGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTATTAAAAATATAAAAATCAGCCAAGTGTGGTGGCAGGCACCTGTAGTCCCAGCTAATTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAACTGGGATTTTGCCACTGCACTCCAGACTGGGTGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAAGGTAAAACCGGGGAAGTCAACAGAGAGCTCTCTCTCATCAAGGAGAACCCAAGATGACTTCACAGAGTATCATGTGAACTGGGCCTAGAAGGGTGGTGAGAAGGATTTGGAAATGAGAAGATGAAGAGGTACAGAACCAGAAAAGTCATGGACGCAGGAAAGTATTGGGTGTAAGAAAAATCATTTGGCAAGAGCTTTTCTCCTTCCTCTTAAAAGAGGGCAAGAATGATTTTCTTTAGGTGACCCCAGAAACTTTCAGATCCTCAATTCTTACCTCAAGTTGAACAGTTAACATGGCCCAAGAGAAGACTGAGGAATGAGACATAGCAGGTGCCTTCCTATTCTGTGCCTTCAGATTTGGCCTGCTTAGATTTGAAGGAGTGATTTTAGTTTTCCTGTACTTCAGTGGGGACAATGGAGAACGAGCTCAGTCCTGCCCCCAATCCTATTCTTCATGGTAGGTGGGGTGGGAGGGAGTGGGGAAAACCCCTGCCAGCCCACTGAATCTTAGATCCATCGCTGCGGAGCTGGTCACCTCTGCTCACCTGCTGTGTTCTTGTTCAGATGGAGCAAGAAACTTTTCAAGTGCCAAGAAAACTAAGTTTTCAACTGGGATCATTAGCGGCTGTTACGCTAAAACCTAGAGTACTTCATGAAAACAGGTTCTGGGGAACATCCTTATCCTGAAAGATTTGTCTCTGAGAAGCAGCATGCTACTGTAAATGGCACTGTAAGTGCCACCTGGGCTTGGGCCTCTATAGAGCCATTAGCTAGGCAACCTCAGACAAGTTACTTAACCTCTCCCATCCTTATTACCCTCACCCTGAGGCTATTAATGCCCACTTTACAAGTTTTCTGTGAATTTTAGCAGTATTGAACATAACTGTCTAGTACACTATGGGGGTTCAATACATGGCACTCATTATCATCCCTGGCATGAATTTTTGTAGGTTTTGTAACTGTAATTGGTTAGGAAGGGGCTCAGGGATTATTGCAAAAGACCCAATGAAAGCATGAGATTTTCTTTCATTCGTTACTGAAAAAGAGAAAAAAGGTCCTTCTGCAAGGTTAGGCATCAATGACACTTCCAAGCTTCCCCCATCTTTTCTCTTCCTTGCAG
Seq C2 exon
TGGAACCAGAGGTCAAGTATGTGGGGAACATGCACGGCAACGAAGCGTTGGGCCGCGAGCTGATGCTGCAGCTGTCGGAGTTTCTGTGCGAGGAGTTCCGGAACAGGAACCAGCGCATCGTCCAGCTCATCCAGGACACGCGCATTCACATCCTGCCATCCATGAACCCCGACGGCTACGAGGTGGCTGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120054-CPN1:NM_001308:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(14.7=58.7)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)