BtaINT0043210 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023941 | CPN1
Description
carboxypeptidase N, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2312]
Coordinates
chr26:20857821-20862859:-
Coord C1 exon
chr26:20862485-20862859
Coord A exon
chr26:20858021-20862484
Coord C2 exon
chr26:20857821-20858020
Length
4464 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGC
5' ss Score
3.69
3' ss Seq
TGTGTTTCTCTCACTTGCAGTGG
3' ss Score
11.29
Exon sequences
Seq C1 exon
CTGGCTTTGGACAGACAATTCTGAACTTTCTTCCCAGGTGCTGTCACACTGGTGTTTACTAGCGGGAAACAAGAAGAGCTGGTTATTGGCCCTTGGATTTTGACTGGTTACTGGGAGAAGCAGGGCCTATTTAGTCTCTGAAAAAGCCCAGCAAGATGTCAGACCTGGTCTCAATCTTCCTCCACCTCCTTCTCTTCAAGTTGGTTGCCCCAGTGACCTTTCGCCACCACCGCTATGATGACCTCGTGCGGATGCTGTACAAGGTGCACAACGAATGTCCCCACATCACTCGGGTTTACAGCATTGGGCGCAGTGTGAAGGGGAGACACCTCTATGTGCTGGAATTCAGCGACTACCCTGGAATCCACGAACCCT
Seq A exon
GTAAGCCCTCAGCGTGTGTCTTAAAGTGTGTGGGGGCAGGACCCTTGCCTTCCAAATCCAGTAACTGGGGTGGTTTCTGGGAAGGTCCATGGACCCTCTACCTGTGCAGTATCACCACTTCCCCAGCCTATGCTAAGTATTTCCTTACTTAGCCCTCAAGCTGGCCCAACCTCTGGAGAGCTGCAACCCCAATTCAAGCTCCTGTCTGCTGCTCCTGTTTGGGTTCTGTTTGCTCAAGACCTTAACGGTAAAAGAGTGAGTCTTCAAAAAAAAAAAAAAAGAGTGAGTCTTCTTCCCTGCTCCCTTCCCATCCCTCCTGCACTCCCCTTCCCTCCCTTCTTCCTTGCTTGCTATTTCTGTCCTGCCTTTCCCTATCCAATGCCTCTGGAGAAACAATTAACTCTTCTGGTGCTGCCAGGAAACTTGGAAGAGTTTAGGGATAGCTCTTTGTGGAATGACAGTGTAATCAGAGTCTGGGATCCTGGAGAAAATCTGAGGTCTGGGTTATTCATTTTATTTATTGCATTATTTATTATTTGTTACTATTATAAAAGCAATCCATGTTTGGATTAAAATAGAAATTAGATAAGGAAAAACCCTTATCCATAATTTCACCACTCAGAGATGACCATTGTTAACATATTGTTGTATCTCCTTGCAGACTTTCTTCTTTGCATTTTTTAAATGAAGGTGGAATCCTACTATATCTGCTTTTCTCATTTCCTAGTCTTTGATGAATAGCATACATGTCTGGAAATGTAGATCTGCATTATCATTTTCAGCTGCATAATATTCCACGGTTGTATGGTTGTACTTAACAGTTCATTTATTGATAGGCATTTAAGTTGTCTCTAATTTCTCAGTGCTTTTGCTGCTTTACCTACCAGCAACTGTGACATGCAAATACACCATTTCCTCTTTCAGTCTCTTTTCCTCTCCATTTCCACACCCCTCAGCTTAGCCCATATTACATCACAACCTGCCTAAGTGATTGCACTGGGCTCCCAACTGTTCTCCTAACTCCTAACAGCCACCACTCTCTAAACCCTGCATTTAAGACACAGATGCTAGATGGCCAAATTATTGACATAATCACCTCACTCCCTTGCTTAAAAACCTTCAATGGCAATCTTACACACATGGGTGGCACCCAACACCCATTGGGTGGCAATCTTACAATCCATGACAGCTTCAGAATATTATGTGGTCAGTCGAGGGAGGTGTGTGAGGGGTGGGGAGCCTGACTCAAGGAAGGCTTCGTGATTAGCTGATGACCAGGGCCTTGCTTTGAAGCTACACTTGCATAGCAAACACCCTTCTTTTACTCAGGTTGCATGTTTATTTCGGAAGCTTGTGGATGCTAATGAGCATTGTAGGCTTAGCCCTTCATTCTGTGCCCCTTTCTTAAGCCCCCTTATTTCTAGCATTCAAGGCCTTTCCTGAAGCTTTTTATACTATTCTATCTCACTGATCCCTATTTTCTCTGATGCCCTGTTAGCTGTCCATCCATTCATTCCTTTCATCCATTCCTTAATTAATCCACAAATATTACTGATAACCTACTGAGTGCAAGCATTTTGGTAGACTCTGAATATAGCATGGAGAATAAAACGAAGACTCTGCTCCCAGGATCTTAATTCTAGTGGGATAAGACTGGCAATAAATAGGTAACTAAATAAATATATCAGCTGAAATTAGTGCTGTTGAGAAAAAGAAACCAGGAAGGAGAGATGGGGAATCATGGAGGATTGTGGATTGAGTAGGCGAGGGGTGTTTCTTTTTAGGAAAAGCTTTTCCTTTGAGGTGATTTTTGAGCACATAATGGAGGTGCCATACTGATATCGGGGATGAAAGTGCTGCACAGAGGCAGGAGCAGGAGTGTGCTTGGCATGTGTGAGGAACAGCAAGGAGGCCCCTGTGGCCCCAGCAGAGAGAACCACAGGAAAGCAAGTCAGTGCAGAGTTGTCGGGGCTCAGGGGGCAGGAGGAGATCACGTGAGGCCTTACAGGCCTGTTCAAAAATTTTGCCTTTTGCTCTGAGTGAAGTGAGAAGCCTTTGGAGAGTTTTAAGCAGAGGAGAGAGATGACCTGACTAAAATTTTTGAAAGATCACTCAGAACAAGGGTGGGCAAACTAGAGTCTTGAGGGCCCGCTACCTGTTTTGGTAAATTAAATTTCACTGAAATACAGTCACACCCATTTGTTTCTGTATTCTCCATGTCTGCTTTCACTGGAAGCATTGAGTAGCTGCAATGAAGACAATATAGCCCTGGAACCCCAAAGGATTTCCTGTCTGGTCCTTTACAGGGAAATTTTGCCAACCACTGACTCAGGAGAATAGAGTTGCAAGGCTAGGCTGATACAGGGAGTTCAAGTAGGATATTTATTGTAATAATCCAGGTATGCAGGTGTCAGGGCTTGTACCAAAATGATGGCAGGGGCTGTTGGGAGAAATGGTTGCATTCTGTATATATGGAAAGTAGAGACAAAAGAATTTTATATTGAGCACCTACTCAGAGCAGGGCACTATGCTAGGTTCTACAAGGCAGTGGTTCCAAACTTTTGGATTTCACGGAAGTTAAAAATATATATGTATTATATATATACACACACATATATAATATTTTTTAAATAAATAATATTGGAGGGGACTAAAATAGATTTTCCAAATTTTATTTTAATGAACAAGGATGTTGAAAAATACTACCTGCCATCTGCTATCACTATCCTTTCCTAAAATAAGCGATAACACCAAGAAGAGCCTCCCTTGTGTCTCAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGACCTGTGTTCGATCCCTGGGTTGGAAAGATCCCCTGGAGAAGAGAAAGGCTACCCATTCCAGTATTCTGGCCTAGAGAATTTCATGGACTGTATAGTCCATGGGGTTGCAAAGAGTCGGACATGACTGAGCGACATTCACTTTCTAACACCAAGAAAAGTAGGTAGGACATGATAAGAGCAAATAAATACACTAAGATTAAAGAATGCACTTGATAGAAAATCCACTACACAATCCGTAGGGGTTATAGACATTCCTTTGGGAAAGACTGCTGTAGCTTTGCTAAGATAAATAGCAATGGATTGTGTCCTAAAGAAAATTTAAAATGGCATATATTGCAAGGGCCAGGTCCAGTAAAGAAAATAGGACGTGTGCAAAATTAAAGTAGAAGTTCAGAGTAGAAAGTGGTAAGTATAATGAAAGAGAAGTTTAACAGTGAATTCACTCCCAGCAAGGAGAATTGAAGTTGGTTTCATGGAATAAGGAGCATTTGAGCCTAGAAGGACAGTGAGGAAGACGTGGAAATGTGGAGATGAAGAGGCATAGAATCAGAAAAGGCCTGGAGGTAGGAGAGCGTTAGGTGGAAGGGAAATCACTTGGCTAGAGCTTTTCTCCTTCCTTCCTTTTAAAAGTGGGGCAAGAATGATTTTCTTTAAGTGATTCTACAGGCTCTTTTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGATGAGGGAGCCTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACATGACTGAAGCGACTTAGCAGCAGCAGAGGCTCTTTTAATGACCTCAATTCTTACTTCAGTTGCACAGTTAACATAGCCAAAGAAAAGACTAAGGAATGAGACAAACATAGACTCCTTCCTACTCTGTGCCTCAAGACACAGCATTCTCAGATGTGAAGGGGAGATTTTAGTTTCCTGAGTACCAGGAAAATTGTATTTTTAACTGGTACAATTAGGAACTGTTATGCTATAGCCTAGAGGAGTCTAGGCTAGCAGATCTTGGAAAAGCACCATCCTTATCCTGAAAAAGTTTGTCTCTGAGAAGCATTAAGCTACCTCTGGGCTTTGACCTCCATTGTTAATCAGCCAGATGACCTCAGACAAGTTACTTAACCTCTTCCATACCCCACACCCTCATCCTGAAGCTAATAATGGCGACTTTACAGATTTTCTGTGAAGATTAGCAATAACATAAATGCCTAGTGCACAGTATTGTTTTAACAAATAGTAGACATTATTATCGCTGGCATGAATTGTAGCATTTGTAGTTACAGTTTATTCAAAGAGGGCTCAGGGGTTATTGGAAAAGACCTAACAGAAACAGTTCAGTTCAGTTCAGTCGCTCAGTCGTGTCCAACTCTTTGCGACCCCATGAATCGCAGCACGCCAGGCCTCCCTGTCCATCACCAACTCCTGGAGTTCACTCAGACTCACGTCCATCGAGTCAGTGATGCCATCCAGCCATCTCATCCTCTGTCGTCCCCTTCTCCTCCTGCAAACAAGAGGTTTTCTTTTATTCATTACTGAAAAAGAAGGAAAGTGTCCCTTGGCACGGTTAAGAATCAGCAGCACTTACTAGCGTTCCCCATCTTCTTCCTGCGTGTGTTTCTCTCACTTGCAG
Seq C2 exon
TGGAACCGGAAGTCAAGTACGTGGGGAATATGCACGGCAATGAGGTGCTAGGCCGTGAGCTGCTGCTGCAGCTGTCGGAGTTCCTGTGTGAGGAATTCCGCAACAGGAACCAGCGCATCGTCCGGCTGGTGGAGGACACGCGCATCCACATCATGCCGTCCATGAACCCTGACGGCTACGAGGTGGCCGCTGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023941:ENSBTAT00000032932:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(14.6=59.5)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(21.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]