RnoINT0041354 @ rn6
Intron Retention
Gene
ENSRNOG00000013439 | Cpn1
Description
carboxypeptidase N subunit 1 [Source:RGD Symbol;Acc:70931]
Coordinates
chr1:263757355-263762785:-
Coord C1 exon
chr1:263762340-263762785
Coord A exon
chr1:263757552-263762339
Coord C2 exon
chr1:263757355-263757551
Length
4788 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GGGTTTTGTTTCTGTGCCAGTGG
3' ss Score
6.11
Exon sequences
Seq C1 exon
CTTCCAAAAGGTTTTCCAGGTTTAGGAGGGGAAGGGAAATGAGTCCGGAGGGCAACGTGGCTATCCCGGGGCCACAGAAATAATTCCCAGTGTAGCAGAGGCGGGTCCCCAGCCTCCTGCAGGTGCGGCGGGTGCGAGGCGGCTACTCTGGATCCCAACAGGCAAAGGATTGCTTGGAGAGAGCGGGAAGGCACATTTTAGAGCCGCTTAGAAGCTCCTCGAGATGCCAGACCTGCCCTCAGCCTTCCTGCCCCTCCTCCTCCTCTCCAAGTTTGTTACCCCGGTGACCTTTCGTCACCACCGCTACGACGACCTCGTGCGGACGCTGTACAAGGTGCACAACCAATGCCCGGACATCACGCGGCTCTACAACATCGGGCGCAGCGTGAAGGGGAGGTACCTCTACGTGCTGGAGTTTAGCGACTATCCTGGGACCCATGAACCCT
Seq A exon
GTAAGTCTCGAGTTGTTCTGGGGGGTGTTGGGCCAAGAACTCCTTTCCTCTACAAACCCAGAGATCGAGGTCGCAGCAACAGTGGAGTTCTCTATATACAAATACATTACCTCTTCCTCCGCCGAGAAGGCAGCTGGCACCACTTGGTTCTCAAGCTTCCCTAGCCCCTGGGGAGCTGCCACTCCAGCATATTCCTCTTTTCTAGTTCTGTTTGCTCAAAACTCCATGGGTAAAGGGTGTCTTCTTCCTGTTCCCTCCACCCTCCCCTCTTTTCCCTCACACCCTGGGTCTTTTTCTCTCACTCCCGCTATCAAAATCCAACGACTTGGGAACATAGCAGAATGTCCTAGTTCTCCTGAGGGACCAGATAGATCCCTTCCAGAAACAACGTGGTGTCCTAGAGAGAGTTTGGGGAATTGGGATATTGGCTTGCTTTCTTGTTAGTTTGCTTCTGTTACCAAAGCAATCTGTGTTCACTTCAAAAATTAGTTCATGACCAGCCTGGAAATATTAAAAAAAAAAAAAAATCTCGGGGTTGAGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCGGCTCCAAAAAAAAAAAAAAAAAAAAATCTCAAAACAACCAATCAGCTGACAGAAGCACTCACAGAGACCTAGCATTTACATCGGTCGATGTCTGTCCCTTCGGTCACATTATCCATCCTACATCTCAAATGTAAAAGGGAATCCCGCTGTCACTTTTTCTTAGTTCTTCGTCTGTGTAGTCAACACAGCTCTCTGGCATCTTTCTTGGTTGCGTAACGAGCAGTTACCTTGTCTCGTCAGCTGCTCAAATATTGATGAACGCCGACGCTCTTGTTGCTTTGTTTGTAGCAGTGGTGACATAGTTAAGTGACACGTCTTATTTCAGACCCTCCCTCAGAGGGTCAACGGCAAAGCTCTTTCCCTCCGGTATCCCAACTGCACTCCGTCCTTCATTATACTCTGCCTTGAATCATTGCACAAAGCTCCCAATGGTCTCCTAGCTAAACCCACCAACTTGCCCAAAAGAGGCCAGAATCATTTCTCTCAATACTAATAGTCTTCTTGCTCTCTTGCTTTAAAGGTTCAATGTGGTATTGACCACGAGAGCTTCTAAATTTTATAGAGCTTGCTCAAGAAGAGCCACGTGATTCCCCTGGGGTTAGAGCCTTGCATAACAGTACCTGCCTTCCGCTTAAGGCTGTTGATGAACTTTGTGAGGTTCTAGTCCACGCCCCTTCTTGGTGCCCCCCCCCCCACCGTGCTTCCAGCCTTCCAGCACTCAGGGTCTTCCTTGAGGCTATGGCAGACAGGGCGGGCTTTTCCCCTGAGTTAGCACTTCTTCCATTTGCTCCTTACATTCCTTCATTCTACAAATATTTACCCATCGCCTACTAGAACTTTTGATGGGGCTGGAGAGATGGCTCAGCAGTTAGGAGAGCATTTGCTGTTCTTACAGAGGCCCCAAGTTGGGCTCCAAGCACCCAGCAGCTCACAAACACCTGAAACTCCAGCTCAAGTGGGTCTGGTACCCTCTGAAGGGCTCTACGGACCATGCAGACACATGTACATAGAATTATATGGTAAACCACAAGGGGAGAGAGAGAGAAAAAAAGATCCTTATAAAGAAAGAACTTGGGGACTGGAGAGATGGCACAGTGGTTAAGAGCACTGACTTCCAGAGGTCCTGAGTTCAATTCCCATGTGGTTACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAATAGTGTACCCACATACATGAAATAAATAAATTAATCTTAAAGAAAGAAAAGAAGGAAGGAAGAAAGAAAGAAAGACAGACAGACAGACAGACCTTTCAGGCAGGCGTGCTGACACTTCAATAGGCTTTGGGAGGACAACAAAGAGTAATTCAGACTTTGCCCTAATAAGGCTGAATTATAGCAGAATGAATATATATATATATATTTTGCAGACCAGCAATGAATGGGGCAGTAGGTATGTCAGATGGAGTGAGTGCTATAGGAAGAGCTTAAACTGGAAGGAGAGATGGGCGTCCTGTGCTACAATCCACAGGTTAGCAGAAGAGGCCACTCTCTCCCAAAGGTTCCTCTGCCTCAAGTGGTGTTGAGCAGAGATCTGAAGGGTCTCTGAGATCTGACAGGCTAAGGAAAAAGAGAATGCAGTTCCCCAGGAGGCAGAGGGCGATTAGCATATGTAGTTCCAGCAGAGGCACTGAGATCCGAGCCAAATGGTTGAGAGCATTGAGCTCACTTGGGAGTGAGAATCAGGTGGAGCCACCTCGGTCTTTACTTTGAGCTAAGAGAGACTCCGACTGAAGAGTTTTAAAGATGCTCGGGATGGAGGCCAACAAAGGGGCTCCACCCGGCTGCTTTTAGCAGGTGAATGGAGTTTTAAGGAACCGCTATCACACTCCGTGACTGATCTGTGCTGACTTCTACCGAAAGAGCTGAAGAGCTGGGACAAAGATAAACGCTGTCCACAAAGCCCAAAGATTCCATGTCGGGGGCCCTTCCACGCCCTTTACAGAAAAGTTTTTATCCACTCCCCACTGATGTTAATGATCCACTCAGATGCAGGGAGACTGCATGGGAGACGTTTTATAACGACGTAGGTTTGAGGGTGCGGGAGCTCCAGCCAAAAGAACCGCTGGCAATGCTTATTACAAGACAGCCGTCTCCTGTCTCTATTGTTTAAAAGCAGAGGGTTCGCTAGTGAACACTCACTGAACACAGCCCAACGCTGGGGGAAATAGGCCAGCGACTCCTGCACCTGAGTCTCACAGGTGCATTGGACCTTGCATTGGACAGCCTCGAGAATAGAGGGAACTAAAGAGATTTCCCAAATTTTATTTTACCAAAGACAAACACCTAGATAACCTAATTACTAGCACCAACATTTCCTTAAAAAGAAAGCTGAGGAATGGACTGGAAGTGTGCTGCATGCCTTTATTCTCAGCCCTCAGCAAGCAGAAGGAATTCTGTGAGACCACACTGGTCTAGACAACAAGTTCCAGAACAGTCTGGGGCTGCTGAGAGAGACCCTTTTATATACCTGCATGGTATTTCCTAAAGCATGATCCTTGTGGGAAAGCATTCATTAGAGAGGCTTCTTGTGATGAGTTACTCTGAAGATAAATAATGATGAGGTTTTCTTTATTTCTTTCCTTCTTACTTTCTTTCTTTCTTTCTTTCTTTTCTTTTTTCGGAGCTGGGGACCGAATCCAGGGCCTTGTGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCCTTTTTTTTTCCTTTCTAAAGATATGCTAAGGTCATCTACTCAGCTAATGCTGGGTCCCGTTGAGGAAATAAGCCATGAGCATACATAGGTAGAGTCCAGAACAGTAAGTACCATGAAAGGAAAGCCACAGAGACTCCCTCCTAACCAGAAGAGCTCAGACTTAGTTTGAACTGGACCAGCAAGGACAGCAAGGAAATAGGGAGACGAAGAGGAAGAGAATCAACAACCAGAGAAGCAGACATATGCTGTGTAGAAAAGAGGGCAGCGCCGGAAGAGCTTTTGTTGAAAGGGGAGCACAGCTTCTCACATTTAGTGACCCTAGAACAGCAGTTCTTAACACGTGGGCCAAAACCCCTTTGGGATCGCCTATAGGACATCCCATATTTGCATTATGGTTCATAACAGTAGTAAGATGTAAAGGAAAGATAAAATAAGTTTATGGCTGTGGGTCATGAGGAAATGTATTAAAGGGTCAAGGCATTAGGAAGCTGAGAACCATTGAGCTAGAGGCTTTTACAGAGCCCCCCATCTGACATCTGTTGACAGTTAGTGTGGCCAAAGGGAGAGTAAAGCCCAGGCAGAAGTAGATTCCTTTCTCTCTCATGCCTCAAGACATGCCTTTCCGACTATCAGAGCCCCAAATGCCAAACAACTTACATCTTCAACTGGAAAGATTTTACCAGGACCAAGAGCAGTTTTGGGGGAAAAGCCATTGTTCAGGAAGATTGGGGTGATGGGTGTGTCTTTGCACATGCACTCTTCTGGGTGGGACTGAGTGCTCTCTGCGCATTGATGTCTACTTTGCCAGGCAGCCTCAGACAAGTTACTTAGCATCCAGCCCTCACCTCTTCACTCTGAGGCTATGGGACCTACTCCACAAGTTTTCTGTTAGGATTAGCAATACCGGGGCTGGAGAGACGGCTCAGCGGTTAAGAGCCCTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGACTCGCAACCATCTGTAAAGAGATCCGATGCCCTCTTCTGGTGTATCTGAAGACAGCTACAGTGTACTTATGTATAATAAATGAATAAATCTTAAAAAAAAAAAAAGATTAGCAATACCGAACCTCAACGGCTAGTATACTTGGGGTTCAATAAATGATGGCCATTATTATCCTGGTCATGGATTTCTATAAAATTTCCAATTACAATTTATTAGGAAGGGGATCGGTAGGAAATACCTAATCAAAGCCTGAGATTGCCTTTCCATTTTGGGTTAGGGATTGGGGGTGGGGTGAGTTGGGGGACGGGATGCGGGGGTGGAGTGGGGTTAGACTGGATCTTTTGAGTCCCAAGTTAGTGTTGAACTCACTGTGTAGACAAAGCTGACCTTGAATCCATGGTCCTCCTGCCTGCCCCTTCAAGAGCTGGGTTTTGTTTCTGTGCCAG
Seq C2 exon
TGGAACCGGAAGTCAAGTACGTGGGGAACATGCACGGGAACGAGGTGCTGGGCCGCGAACTGCTGCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGGAACCAGCGCATCCTGCGCCTCATCCAGGACACCCGCATTCACATCCTTCCATCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013439:ENSRNOT00000018221:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(14.7=58.7)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]