MmuINT0041530 @ mm10
Intron Retention
Gene
ENSMUSG00000025196 | Cpn1
Description
carboxypeptidase N, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2135874]
Coordinates
chr19:43980803-43986556:-
Coord C1 exon
chr19:43986066-43986556
Coord A exon
chr19:43981000-43986065
Coord C2 exon
chr19:43980803-43980999
Length
5066 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GTTTCCGTTTCTGTTTCCAGTGG
3' ss Score
9.58
Exon sequences
Seq C1 exon
GAATCAATGAGCCTCTCAAAGTGGGGATGCGCCGAATCCTTCCAAAAGGGCTTCCAGATTTAGGAGGAGGAAGAGAAATGAGCCCGGAGGGTATTGTGGCTATCCTGGGGCCACAGGAATAATTCCCAGCATAGCAGAGGCGGGTCCCCAGTCTCCTGCAGGTGCGGCGAGTGCAAGGCTGGTTACTCTGTGCTCTGGATCCAGACTGGCAAAGGATTGCTTAGAGAGCGGGAGGGCACATTTCAGAGCCCCTTAGAAGCTCCGCGAGATGCCAGACCTGCCCTCAGCCTTCCTGCCCCTCCTCCTCCTCTCCAAGTTTGTTACCCCGGTGACCTTTCGTCACCACCGCTACGACGACCTCGTGCGGACGCTGTACAAGGTGCACAACCAATGCCCGGACATCACGCGGCTCTACAACATCGGGCGCAGTGTGAAGGGGAGGTACCTCTACGTGCTGGAGTTTAGCGACTACCCTGGGATCCATGAACCCT
Seq A exon
GTAAGTCTTGAGTGTTTTGGGGGCGTGTTGGGCAAAGAACTCCCTTCCTCTACAAATCCAGATAGAGTGTTCACTGCCCCAGTGGAGAACTCCATGTACAATGTATTTACCTCTTCCTCCACCCAAGAAGAAGGCAGGTGGCCCCACTTGGTTCTCAAGCTCCCCTAGGCCCCGGGGAGCTGCGACCCCAGTTCAGGCTCCAACACATTCCTCTTTTCTGAGTTCTGTTTGCTCAGAACTCCATGGGTAAAGCCCGTCTTCCTCCTGTTCCCGGCCCCCTCTCCTCCTCCCCCCCCCGCCCCCCCCCCATCTTTTTCTCTCACTCCCTCTACCAAGACCCAAAGACTTGGGATCAGGGCAGAAATGGTTGTCCTCCTAGTTCTCCTGGGAGATCAGGTGCGTCCTTTCCAGGAACCATATTGATCCAGCATGATGTGCTAGAGAGATTTTGGGGGTTGGGATATTAGCTTGCTGCTTTATTGTTAGTCTGCTTCTGTTATCAAAGCAATCTGTGTTTGCTTCAAAAATTAGTTCATGACCAGCCTGGAAACATTTAAAAAAGAAAACAAACAAACAAAAAAAGCCAAAAGCAACTCACCAGCTGAAACAAACAAACAAACAAACTAGAAACCAGAAGAGGCAAAACTAAGAAAACGAAGAGGGACCCCAGCACTCACTGATACCTAGTATTTACATAGACTGGCATCTCTCTTCTCAGACACATGATGCAATCCTACATCTCAAATACAAAATGGGAAAATGTCCCCCGCTTTTCTCAGTTCTTCATCTGTGTCGTCAACACAGCTTGACGGCACCATTCTTGGTTGTGTAGTGTGCTAGTCCCTTGTTTTCGTTAGCTGTTTACATTTCGATGAACACTGACACTCTTGTTGTTTTGTTTACAATGGTGACATCTCAGTTAAGTCACATGACTTATTTCAGAGGGTCAACAGCAAATCTCTTTCCCTCCCGTATCCCAACTCCACTCCATTTCCCATTATACTCCGCCTTAAATCAATGCACGGAAGCTCCCATGCTAAAGTTGCCACTGTCTAAACCCACCTAGTCCCAACTTGCCCAGGAGAGGCCAAAATCATTTCTCTCGCTACTAATATGGTCTTCTTGCTCTCTTGCTTTAAAGGTCCAATGGGGATTGACCATGAGAGCTTCCAAATTTTATAGAGAAGGCTCAAGAAGAGCCCTGTAGTTCCCCTGGGGTTAGATAGAGCCTTGCACCGCAAGTACCTGCTTTTTTTTCAGCTTGCATGCGCTCTGTGGAAGCTTAAGGCTGTTGATGGACTTTGTGAGGTTAGACTCTTTAGTCCACACCTCTTCTTGGTGCCCCTGTATACTTCCAGCACTCAGGGTCTTCCTTGAGGCTGTGGCAGACAGGGCAGGCTCTCAGACCCCTCCTTTCCCCTGAGTTAGCAGGTCTTTCATTTGCTCCTTACATTCCTTCATTCTTCAAATATTTACCCATCGCCGACTAGAACTTTTGATGGGGCAGTGGAGATGGCTCAGCAGTTAAGAGAGCACTGGCTGTTCTTATAGAGGCCCCAAGTTTGGTTCCAAGCACCCGGCAGCTCACAGACATCTGAAAGTCCAGTTCAAGTGGATCTGCTACCCTCTTCAGGGCTCTCTGGACCACACAGACACATGTACCTATAATTAAATAATAAACCAGAAGGGGAGAAAGAGAGAAAAAAGATCCTTATAAAGAAAGAATTTTCAGGCAAGACGTGCTGACACTCAATAGGCTTTGGCAGGGCAACAAAGAATAATACAGACTTTGCCCTAATAGAGCTGAATTATCGAAGACTGAGACCAGTAATAAGTGGGGCAGTAGGGTCAGATGGAGCAAGCGCTATAGCAAGAGCTTAAACCGGACTGGACATCCTGTGCAGCAATCCAGATGGAAGCTGAGGAGGTCACTCGTATCCCCCAAGGCTCCTCTGCCTGAGGTGTTGCTGAGCCGAGATCTGAAGAGTCTGGGGTGGGGGTGGGGCATGACAGGCTAAGGAATAGGGGGAATGCAGTTCCCCAGAAGGCAGAGGGCAGTTGCATACAGTTCCAGCGGAGGCAATGAGATCAGAGCCAGCTGGTCGAGAACACTAGGCACTGGGAGCTCTTTGGAGAGTTACAAGCAGGTGGACCCACCTTGACCTTTACTATGAGCAAAGTGAGACTCTGGTCTCCAGAGAATTTTAAGGATGCTCAGGATGCAGGACAACAACAGAGCTCCACCCACCTGCTCTAGTGAATGGAGTTTTATAGAACCACTATCACATTCCTTTTTGAATTATCTGTGGTGGCGTCTACTGAAAGAATTGAAGAGCTGGGGCAGAGATAACACTGTCCACAAAGCCTAAAGATTCCATGCCAGGCTCTTTACAGAAAAGTTTTATCAGCTCCCTACTGGGGCACATGGATGCTAATGATCCACTCAGATGCAGGGAGCCTGCGTGGGAGATGTGTTTAAAGACGTAGGTGTGAGGGTGCAGGAGCTTGAGCCAAAAGAGCCTCCAGTAATGCTTATTACAAGACAGCTGTCTTCTGTCTCTACTGACCTTCGAAGCAGAGGGGTTGCTAGTGAATGCTCATTGAACACACAGGGCGTGGCAGATGACATAGACCAGCGATGCCTACACCCGAGTCTCACAGCGTCACCATCACATTGGACAGCCAGGAGAATAGAGGGGACTAAACAGATTTAGTCCAAATTTTATTTTGCCAAAGACAAATACCTAGTTACCATCACCAACATTTCCTTAAAAAGAAAGCTGAGAAATGGTCTGGGGGTGCGCTGCATGCCTTTATTCTCAGTGCCCAGAAGGCTCTCCGTGAGGCCACCCTGGTCTATATATACATTTTCCAGAACAGTCTGGGGCTACTTAGAGAGACCCTATCTCAAGCAAAACAAAACAAAACAATAAATAGAATATGTACTACATGATACCTTTTTTTTTTTTTGAGGCAGGTCTCTCTATGTAGCCCTGGTTGGCCCAGAACTTGCTATGTAGACCAGGCTGGCCTCCTCAAACTCACTGCGTATCTGACAGTCAAGTTTTAAGATTAAAGGCAAGTGCTCTACGCCAGGCCTGCATGATATTTTCTAAAACCTGACCCTCATGGGCTGAAAGCATTCATTGGAGAGGTTGTTATGGGAATACTAAGATAAATCACGATGAGATGGTTTTTTTTTAATAAAGATATGCTAAGGTCGTCTACTTGGCTACTGCTAGGTCCTATAGAGGAAGAAAGCCATGAGCATCCCTAGGGAGAGCCCAAAACAGTAAGGACCACAAAAGGAAAGCTACACAGGACTCACTGCTAACAAGAGGAACTCAAGCTGGCGACAGGGACTTACCAGTGTTTGAACTGGACCCATGAGGACCGCAAGGAAATAGGGAGACGAAGAGGAAGAGAATCAACAACCAGAGAAGCAGACATATGCTGTGTAGGAAAGAGGGCAGCACTGGAAGAGCTTTAGGTTAAAAGGGAGTACAGCTGTCTCACGTTTAGTGACTGGAGAGCAACAGTTCTTTTTTTGTTTGTTTGTTTGGTTGGTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCGCTCTGTAGATCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCACTCTGCCTCCCAAGTGCTGAGATTAAAGGCATGCGCCACCACCGCACGGTGAGAGCAGGGCTGGAACCCCTTTGGGGTCGCATATCAGACATCCTGCATATCAGACATTCTTCATATCAGACATCCTGCATATCAGATATCCTGCATATCAGACATCCTGCATATCAGACATTCTTCTTATCAGACATTCTTCATATCAGACATTCTGCATATCAGACATCCTGCATATCAGATATCCTGTATATCAGACATTCTGCATATCAGATATCTGCATTACAATTCATAACAGTAGTAAACTTACAGCTGTGAAGGAGCAATGAAATAATTTTATGGTTGTGGGTCCTGAGGAACTGTATTACAGGGTCAAGGCGTTACAAAGGTTGAGAACCACTGAGCCTCTAGGCTTTTACAGAACCCCATTCTGACTTCCATTAACACTTAATGTGGCCAAAGGGAGAGTAAAGACCCAAGCAGAAGTAGCTTCCTTCCTCTCTTGTGCCTCAAGACATGCCTTTCAGACCATGAAGGAGAGATGCCAGAGCCCCAGATGCCAAGCCACTTACATCTCCAGCTGGAAAGATTTTACCAGGACCAAGAGCACTTTATGAGAGAGGTTTTGGGGGAAAGCCATCGTTCAGAAAGATTGGTGTGGTGGATGTGTCTTTATGGATGTGCTCTCTGGACGATACCGAGTGCACTCTGGGCTTTGATCGCTGTTAGATACATTGTCAGGCAGCCTCAGACAAGTTACTTTGCATCCACCCCTCCGGTCTTCACTAGGAGACTATGGGACCTACTCCCGTTTTCTGTTAAGGTTAGCAATAACGAGAGCCGGGCGTGGTGGTTGCATGCCTTTAATCCCAGCACTCGAGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGATCTACAGAGCGTGTTCCAGGGCAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAACAAAACAAAAAACAAACAAAAAAGATTAGCAATAACGAACCTGAACAGCTAGTAGACTTGGGGGTTCAATAAATGGTGGTCATTGTTATCCTGGTCATGGATTTATATAGATTTTTTTCCAACTTCACTTTATTAAGAAGGGGCTTGGGGATTGCTAGGAAAGACCTAATAAAAGCCTGAGATTTTCTTTCCTTTTTGGATCAGGGATGGTTGGACACAGGAGGGGTTAGTATGGGGGGTAGGCGGCTGGGTGGGGGTGGGGGGGTGGAATGGGGTGAGACAAGATCTTGTGAGTCCCAGGTTAGTCTGGAACTCACTATGTAGACAAAGCTAGCCTTGAACCCATGATCCTCCTGCCTGCCCCTTCAAAAGTGTTTCCGTTTCTGTTTCCAG
Seq C2 exon
TGGAACCGGAAGTCAAGTATGTGGGAAACATGCACGGGAACGAAGTGCTGGGCCGCGAGCTGCTTCTGCAGCTGTCGGAATTCCTCTGCGAGGAGTTCCGGAACCGAAACCAGCGTATCCTGCGCCTCATTCAGGACACGCGCATTCACATCCTGCCTTCCATGAACCCTGACGGCTACGAGGTGGCTGCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025196:ENSMUST00000026210:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PU(14.7=58.7)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types