HsaINT0005054 @ hg19
Intron Retention
Gene
ENSG00000106624 | AEBP1
Description
AE binding protein 1 [Source:HGNC Symbol;Acc:303]
Coordinates
chr7:44151106-44151649:+
Coord C1 exon
chr7:44151106-44151229
Coord A exon
chr7:44151230-44151452
Coord C2 exon
chr7:44151453-44151649
Length
223 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TGAGGCTCCCGCCCTTGCAGGGG
3' ss Score
8.29
Exon sequences
Seq C1 exon
CTCATGAAGGTGGTGAACGAGGAGTGCCCCACCATCACCCGCACTTACAGCCTGGGCAAGAGCTCACGAGGCCTCAAGATCTATGCCATGGAGATCTCAGACAACCCTGGGGAGCATGAACTGG
Seq A exon
GTGAGGGTCTGTGGGGGCCAGCAGCTGGCCTCTGCTGCTGATGTGCAGAGCTCACTGCCTCCCGCCTGTTCCGGAGCCTCTCTGGGGATTCTGGCTTGTCTTACAGGGCCCTAGGAGCCCCAGCTGTCCCCCAGACCCTCGGGTATGAGGTGGGTCTGGGTCCTTCCTCAGCTGCCCTGGGCCTCGGGAGACTGAGTGCTCACTGAGGCTCCCGCCCTTGCAG
Seq C2 exon
GGGAGCCCGAGTTCCGCTACACTGCTGGGATCCATGGCAACGAGGTGCTGGGCCGAGAGCTGTTGCTGCTGCTCATGCAGTACCTGTGCCGAGAGTACCGCGATGGGAACCCACGTGTGCGCAGCCTGGTGCAGGACACACGCATCCACCTGGTGCCCTCACTGAACCCTGATGGCTACGAGGTGGCAGCGCAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106624-AEBP1:NM_001129:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=PD(93.8=80.4)
A:
NA
C2:
PF0024619=Peptidase_M14=FE(19.9=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGTGGTGAACGAGGAGT
R:
TCGTAGCCATCAGGGTTCAGT
Band lengths:
301-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)