HsaINT1008364 @ hg38
Intron Retention
Gene
ENSG00000121898 | CPXM2
Description
carboxypeptidase X, M14 family member 2 [Source:HGNC Symbol;Acc:HGNC:26977]
Coordinates
chr10:123769457-123771039:-
Coord C1 exon
chr10:123770916-123771039
Coord A exon
chr10:123769575-123770915
Coord C2 exon
chr10:123769457-123769574
Length
1341 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGA
5' ss Score
8.51
3' ss Seq
TTTTTCTCTTTTTGAGACAGGGT
3' ss Score
4.53
Exon sequences
Seq C1 exon
TTGATGAAAGTTGTGAATGAAATGTGTCCCAATATCACCAGAATTTACAACATTGGAAAAAGCCACCAGGGCCTGAAGCTGTATGCTGTGGAGATCTCAGATCACCCTGGGGAGCATGAAGTCG
Seq A exon
GTGAGAAGGGCCCCTCTGGGATGCTTGGCCCCTTCATCTTTGGTACTCATGTAAACAGTTAGGAGACTGTTCACCCTATGAGAAGATTCATGCCACAGGGCATCAGCTGTCCACACCACTGCTGTCTCACGTAGACAGATTTTGCCCATGTTGGCTCTGTGAACCACTCATCTTATGATATGGACTATAGAATTATTTACACTGGAAATACCCATCTTTTCTCCAAATGGAGCATATTTCATTCTCTGTCGTCCACCTCTGAGACCAATCACAATAGCCAAAGAAGAAAGTGGCTGAGGTGGGCAGGACAGAATTTCCTCCTCCTTCAGGATTCCCTGATCATTAATGGCTCATATTAGAGGAGCTTCTCCCCATTCTTAAAAAAATTCAATTATATTTTTAGATATTTCCTGTTTTCAGACATTTCCCATTCAGTCACTCCCCAGCCTGCACCTGTATAGGTCAGATGGGCTTCTCTGTTTTTCTTTTTGGTAAATCTGGGAGCTGTTTAGAAATCTGCTGATATTTAGGTGCAAAGATTTGGCTGATTTACTTTAACATTCATCAGGGTCTCAGGAGTTCCTCTCCGGAAGTGGTTTTTTTTGTTTGTTTTGTTTTGTTTGTTTGTTTGTTTGTTTTTTGAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAATCTCGGCTCATGGAAACCTCTGCCTTCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGTGCCACCATACCCAGCTAATTTTTGTATTTTTAGTAGAGACATGGTTTCTCCATGTTGGTCAGGCTGGTCTCGAACTCCCGACCTCAGGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGAGTGAGGCACCACGCCCAGCAGGAGTTTATTTTAAATGGTAAAAACTTTATCTGCTGGTAAAATCACATTTCCTCAAAAGCAGCAGCTTTGCCAATGAGGGAAGGAGATGTGTTGTCAGCTCGAGCCCAGCACTGATAAATGCCAGGCCCTTGTCCTTTCTGACTGCTGTAACAAAATATCAGAGGTTGGGAAATTTCTAAACAACAGAACTTTATTGCTCACAGTTCGGGAAGCTGGGAAGTCCAAGGTTAAGGCACGGGCAGATTCAGTGCCTGGTGAGGGCTGTTCCTCTTAAGACCCCTTCTTGTCTTACATGGCAGGAGCAGAAGGTCAAAAGTGCCTGGCTAGTTCTCTGGAGCCCTTTTATAAGAGGAGTTATCTTTTCATCACCTCTTGAAGGCACCACCTCTTTTATTTTTTTTCTCTTTTTGAGACAG
Seq C2 exon
GGTCTCATTCCGTCTCCCAGGCTGGAGTACAGTGGCACAGTCTTGGCTCATTACAACCTCCACCTTTTGGGCTCAAGCAATCCTCCCACCTCAGCCTCCTGAGAAGCTGGGATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121898:ENST00000368854:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(13.3=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAGTTGTGAATGAAATGTGTCCC
R:
CTGTAATCCCAGCTTCTCAGGA
Band lengths:
238-1579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains